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    Spatial Transcriptomics

    Spatial transcriptomics utilizes a variety of methods to define cell types, by means of mRNA data, to their histological locations. Spotted arrays of specialized mRNA probes are often used capturing information about subcellular localization of mRNA molecules.

    Webinars

    • NOV 12, 2025 | 7:00 AM
      Transformative Technologies in Pancreatic Cancer: Multi-omic Insights and Organoid Innovation
      Transformative Technologies in Pancreatic Cancer: Multi-omic Insights...
      In recognition of Pancreatic Cancer Awareness Month, join us to explore how cutting-edge technologies are transforming our understanding of pancreatic ductal adenocarcinoma (PDAC), one of th...
      Speaker: Dr. Max Reichert , Dr. Hartland Jackson
      Sponsored By: Leica Microsystems
      11
      OCT 30, 2025 | 9:00 AM
      From Myelin Damage to Immune Dysfunction: Unraveling the Aging Brain
      From Myelin Damage to Immune Dysfunction: Unraveling the Aging...
      Aging is associated with progressive white matter degeneration, which impairs brain structure and function. Defects in myelinating glial cells, combined with chronic neuroinflammation, contr...
      Speaker: Dr. Janos Groh
      Sponsored By: Vizgen
      9
      OCT 01, 2025 | 9:00 AM
      Accelerating Biomarker Discovery and Therapeutics Development Through Customized Solutions for Drug Repurposing and Integrated Multiomics Analysis
      Accelerating Biomarker Discovery and Therapeutics Development...
      Our experience collaborating with oncology and immunology leaders in the pharmaceutical and biotech space has revealed the numerous challenges in every stage of drug development. From target...
      Speaker: Sathiya Manivannan
      Presented at: Cancer Research & Oncology Virtual Event Series 2025
      Sponsored By: QIAGEN
      5
      APR 29, 2025 | 8:00 AM
      From pigs to patients: The omics edge in xenotransplantation
      From pigs to patients: The omics edge in xenotransplantation
      Only one in four transplant waitlisted patients receive a life-saving organ. Xenotransplantation of pig organs into humans is a promising avenue for addressing organ shortage. Understanding...
      Speaker: Brendan Keating, PhD
      Sponsored By: Thermo Fisher Scientific
      15
      JUL 24, 2024 | 11:00 PM
      C.E. CREDITS
      How can clinicians use spatial transcriptomics data to interpret the complexity of tumor microenvironment?
      How can clinicians use spatial transcriptomics data to interpret...
      Spatial transcriptomics offers a revolutionary approach to understanding the tumor microenvironment (TME) in solid tumors by preserving the spatial context of gene expression, which is cruci...
      Speaker: Kwon Joong Na
      Sponsored By: Vizgen
      17
      JUN 27, 2024 | 6:00 AM
      C.E. CREDITS
      Exploring the immune-tumor microenvironment using high resolution single-cell spatial transcriptomics
      Exploring the immune-tumor microenvironment using high resolution...
      High-resolution spatial transcriptomics stands at the forefront of technological advancements, offering transformative capabilities in the domain of tumor biology research. In this presentat...
      Speaker: Roy Granit, PhD
      Sponsored By: Vizgen
      14
      APR 10, 2024 | 9:00 AM
      Linking spatial and temporal profiling to clinical settings through advanced machine learning
      Linking spatial and temporal profiling to clinical settings through...
      Leveraging advancements in spatially resolved single-cell profiling, our study enhances understanding of glioma evolution and the complex tumor microenvironment. Through spatially resolved m...
      Speaker: Carole Chedid, Ph.D , Univ.-Prof. Dr. med. Dieter Henrik Heiland
      Sponsored By: Vizgen
      13
      MAR 12, 2024 | 10:00 AM
      Unveiling Brain Complexity with the MERSCOPE® Platform Using 1000-plex Gene Panels
      Unveiling Brain Complexity with the MERSCOPE® Platform Using 1000-plex...
      In this webinar, we will briefly introduce Vizgen’s Vizgen® MERSCOPE® Platform for spatial transcriptomics. Following this introduction, we will showcase the capabilities of ME...
      Speaker: Peter Reinhold , Renchao Chen, PhD
      Sponsored By: Vizgen
      10
      NOV 07, 2023 | 10:00 AM
      Understanding the Mechanisms of Resistance in CAR T Immunotherapy for Lymphoma and Strategies to Overcome Them
      Understanding the Mechanisms of Resistance in CAR T Immunotherapy...
      In the last 5 years, the US Food and Drug Administration has approved 4 anti-CD19 chimeric antigen receptor T cell (CART19) products for relapsed/refractory B cell lymphomas and leukemia. Ho...
      Speaker: Marco Ruella
      Sponsored By: Beckman Coulter Life Sciences
      22
      FEB 14, 2023 | 10:00 AM
      A spatially-resolved transcriptional atlas of the murine dorsal pontine tegmentum
      A spatially-resolved transcriptional atlas of the murine dorsal...
      Date: February 14, 2023 Time: 10:00am (PST), 1:00pm (EST), 7:00pm (CET) The dorsal pontine tegmentum (PnTg) is part of the Pons, the largest section of the brainstem. It is a complex region...
      Speaker: Stefano Nardone, PhD , Cory Brannigan
      Sponsored By: Vizgen
      6
      NOV 17, 2022 | 7:00 AM
      Visualizing in situ single-cell multi-omic gene expression from FFPE Tissue with MERSCOPE
      Visualizing in situ single-cell multi-omic gene expression from...
      Date: November 17, 2022 Time: 7:00am (PST), 10:00am (EST), 4:00pm (CET) In order to truly understand cell biology, researchers need easy-to-use tools that preserve the natural complexity of...
      Speaker: Peter Reinhold
      Sponsored By: Vizgen
      13
      OCT 20, 2022 | 9:00 AM
      Immune Secrets of the Lymph Node Revealed by Spatial Genomics
      Immune Secrets of the Lymph Node Revealed by Spatial Genomics
      Date: October 13, 2022 Time: 11:00am (PDT), 12:00pm (EDT), 6:00pm (CEST) Single-cell atlases mapping immune cells provide hints on how immune cells mature, attenuate, and disseminate through...
      Speaker: Jason Reeves
      Sponsored By: NanoString Technologies
      10 1
      SEP 27, 2022 | 10:00 AM
      Spatial Single Cell Characterization of Alzheimer's Disease in Mouse and Human Hippocampus
      Spatial Single Cell Characterization of Alzheimer's Disease in...
      Date: September 27, 2022 Time: 10:00am (PDT), 1:00pm (EDT), 7:00pm (CEST) Alzheimer’s disease is the most common cause of dementia and the seventh leading cause of death in the United...
      Speaker: Vikram Devgan , Miranda Orr
      Sponsored By: NanoString Technologies
      10
      JUN 22, 2022 | 11:00 AM
      Analyzing Highly Multiplexed and Multi-Modal Spatial-Omics ChipCytometry™ Datasets
      Analyzing Highly Multiplexed and Multi-Modal Spatial-Omics ChipCytometry™...
      Date: June 22, 2022 Time: 11:00am (PDT), 2:00pm (EDT), 8:00pm (CEST) ChipCytometry™ is a technique for collecting and analyzing highly multiplexed spatial cytometry data that has been...
      Speaker: J. Spencer Schwarz
      Sponsored By: Canopy Biosciences
      4
      MAY 04, 2022 | 3:00 PM
      Deep Spatiotemporal Insights into COVID-19: a Multi-organ Study
      Deep Spatiotemporal Insights into COVID-19: a Multi-organ Study
      The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that emerged in late 2019 has spread globally, causing a pandemic of respiratory illness designated coronavirus disease 2019...
      Speaker: Arutha Kulasinghe, PhD
      Presented at: Coronavirus Series
      Sponsored By: NanoString Technologies
      6
      MAY 04, 2022 | 10:30 AM
      Neuropathology of SARS-CoV-2 as Revealed by Spatial Biology
      Neuropathology of SARS-CoV-2 as Revealed by Spatial Biology
      The coronavirus SARS-CoV-2 has led to a worldwide pandemic. Beside respiratory symptoms, infected people may develop neurologic dysfunctions such as loss of smell and taste, also seizures, a...
      Speaker: Susanne Krasemann, MD, PhD
      Presented at: Coronavirus Series
      Sponsored By: NanoString Technologies
      4
      MAR 31, 2022 | 11:00 AM
      In situ single-cell transcriptomic imaging in formalin-fixed paraffin-embedded (FFPE) tissues with MERSCOPE
      In situ single-cell transcriptomic imaging in formalin-fixed paraffin-embedded...
      Date: March 31, 2022 Time: 11:00am (PDT), 2:00pm (EDT), 8:00pm (CET) Formalin-fixed paraffin-embedded (FFPE) tissues are the most widely used clinical sample types in histology and molecular...
      Speaker: Jiang He
      Sponsored By: Vizgen
      8 1
      MAR 10, 2022 | 7:30 AM
      Spatial Transcriptomic Profiling of Spiny Projection Neurons in the Mouse Striatum
      Spatial Transcriptomic Profiling of Spiny Projection Neurons in...
      NanoString has started an ambitious project called the "Spatial Organ Atlas." The goal of this initiative is to map the architecture of tissues with spatially resolved whole transc...
      Speaker: Alison VanSchoiack, PhD
      Presented at: Neuroscience Virtual Event Series 2022
      Sponsored By: NanoString Technologies
      3
      FEB 23, 2022 | 1:30 PM
      Innovative Approaches to Biomarker Discovery in the Drug Development Process
      Innovative Approaches to Biomarker Discovery in the Drug Development...
      High-throughput sequencing technology such as RNASeq and whole genome sequencing has enabled deep characterization of health and disease states. Biomarker discovery by these means has only h...
      Speaker: Esperanza Anguiano, PhD, MS-MBA
      Presented at: Drug Discovery & Development Virtual Event Series 2022
      Sponsored By: NanoString Technologies
      2
      OCT 26, 2021 | 11:00 AM
      Constructing a Spatially Resolved Single-cell Atlas of the Mouse Retina with the MERSCOPE Platform
      Constructing a Spatially Resolved Single-cell Atlas of the Mouse...
      Date: October 26, 2021 Time: 11:00am (PDT), 1:00pm (EDT) The retina is the light-sensing part of the visual system and is composed of six neuron types and several non-neuronal cell types, wi...
      Speaker: Rui Chen, B.S., Ph.D.
      Sponsored By: Vizgen
      5
      OCT 21, 2021 | 7:00 AM
      Including Spatial Proteomics in your research - why and how
      Including Spatial Proteomics in your research - why and how
      Date: October 21, 2021 Time: 7:00am (PDT), 10:00am (EDT) To simultaneously visualize multiple markers within the same sample enables a more detailed view of cellular phenotypes and how they...
      Speaker: Charlotte
      Sponsored By: Lunaphore
      1
      OCT 13, 2021 | 10:30 AM
      Spatial Transcriptomic Profiling of Severe COVID-19 Patients
      Spatial Transcriptomic Profiling of Severe COVID-19 Patients
      Severe SARS-CoV-2 infection often leads to development of acute respiratory distress syndrome (ARDS), with profound pulmonary patho-histological changes post-mortem. In this study, we utiliz...
      Speaker: Camilla Margaroli, PhD
      Presented at: Coronavirus Series
      Sponsored By: NanoString Technologies
      2
      AUG 25, 2021 | 1:30 PM
      Spatial Context Matters: Molecular Cartography™ to Study Gene Expression Changes in the Brain
      Spatial Context Matters: Molecular Cartography™ to Study Gene...
      Technological advances such as single-cell RNA sequencing accelerated our understanding of cellular diversity in tissues. However, the ability to elucidate this cellular heterogeneity while...
      Speaker: Jeroen Aerts, PhD
      Presented at: Neuroscience Virtual Event Series 2021
      Sponsored By: Resolve Biosciences
      1
      AUG 25, 2021 | 1:30 PM
      Spatial Transcriptomics of Alzheimer's Disease Mouse Models with and Without Trem2R47H Mutation.
      Spatial Transcriptomics of Alzheimer's Disease Mouse Models with...
      In this preliminary experiment, we used spatial transcriptomics to assess the gene expression profiles of microglia or astrocytes in relation to their distance from plaques. We compared 18-m...
      Speaker: Frances Edwards, PhD
      Presented at: Neuroscience Virtual Event Series 2021
      Sponsored By: NanoString Technologies
      1
    NOV 12, 2025 | 7:00 AM
    Transformative Technologies in Pancreatic Cancer: Multi-omic Insights and Organoid Innovation
    Transformative Technologies in Pancreatic Cancer: Multi-omic Insights...
    In recognition of Pancreatic Cancer Awareness Month, join us to explore how cutting-edge technologies are transforming our understanding of pancreatic ductal adenocarcinoma (PDAC), one of th...
    Speaker: Dr. Max Reichert , Dr. Hartland Jackson
    Sponsored By: Leica Microsystems
    11
    OCT 30, 2025 | 9:00 AM
    From Myelin Damage to Immune Dysfunction: Unraveling the Aging Brain
    From Myelin Damage to Immune Dysfunction: Unraveling the Aging...
    Aging is associated with progressive white matter degeneration, which impairs brain structure and function. Defects in myelinating glial cells, combined with chronic neuroinflammation, contr...
    Speaker: Dr. Janos Groh
    Sponsored By: Vizgen
    9
    OCT 01, 2025 | 9:00 AM
    Accelerating Biomarker Discovery and Therapeutics Development Through Customized Solutions for Drug Repurposing and Integrated Multiomics Analysis
    Accelerating Biomarker Discovery and Therapeutics Development...
    Our experience collaborating with oncology and immunology leaders in the pharmaceutical and biotech space has revealed the numerous challenges in every stage of drug development. From target...
    Speaker: Sathiya Manivannan
    Presented at: Cancer Research & Oncology Virtual Event Series 2025
    Sponsored By: QIAGEN
    5
    APR 29, 2025 | 8:00 AM
    From pigs to patients: The omics edge in xenotransplantation
    From pigs to patients: The omics edge in xenotransplantation
    Only one in four transplant waitlisted patients receive a life-saving organ. Xenotransplantation of pig organs into humans is a promising avenue for addressing organ shortage. Understanding...
    Speaker: Brendan Keating, PhD
    Sponsored By: Thermo Fisher Scientific
    15
    JUL 24, 2024 | 11:00 PM
    C.E. CREDITS
    How can clinicians use spatial transcriptomics data to interpret the complexity of tumor microenvironment?
    How can clinicians use spatial transcriptomics data to interpret...
    Spatial transcriptomics offers a revolutionary approach to understanding the tumor microenvironment (TME) in solid tumors by preserving the spatial context of gene expression, which is cruci...
    Speaker: Kwon Joong Na
    Sponsored By: Vizgen
    17
     
     
  • JUN 27, 2024 | 6:00 AM
    C.E. CREDITS
    Exploring the immune-tumor microenvironment using high resolution single-cell spatial transcriptomics
    Exploring the immune-tumor microenvironment using high resolution...
    High-resolution spatial transcriptomics stands at the forefront of technological advancements, offering transformative capabilities in the domain of tumor biology research. In this presentat...
    Speaker: Roy Granit, PhD
    Sponsored By: Vizgen
    14
    APR 10, 2024 | 9:00 AM
    Linking spatial and temporal profiling to clinical settings through advanced machine learning
    Linking spatial and temporal profiling to clinical settings through...
    Leveraging advancements in spatially resolved single-cell profiling, our study enhances understanding of glioma evolution and the complex tumor microenvironment. Through spatially resolved m...
    Speaker: Carole Chedid, Ph.D , Univ.-Prof. Dr. med. Dieter Henrik Heiland
    Sponsored By: Vizgen
    13
    MAR 12, 2024 | 10:00 AM
    Unveiling Brain Complexity with the MERSCOPE® Platform Using 1000-plex Gene Panels
    Unveiling Brain Complexity with the MERSCOPE® Platform Using 1000-plex...
    In this webinar, we will briefly introduce Vizgen’s Vizgen® MERSCOPE® Platform for spatial transcriptomics. Following this introduction, we will showcase the capabilities of ME...
    Speaker: Peter Reinhold , Renchao Chen, PhD
    Sponsored By: Vizgen
    10
    NOV 07, 2023 | 10:00 AM
    Understanding the Mechanisms of Resistance in CAR T Immunotherapy for Lymphoma and Strategies to Overcome Them
    Understanding the Mechanisms of Resistance in CAR T Immunotherapy...
    In the last 5 years, the US Food and Drug Administration has approved 4 anti-CD19 chimeric antigen receptor T cell (CART19) products for relapsed/refractory B cell lymphomas and leukemia. Ho...
    Speaker: Marco Ruella
    Sponsored By: Beckman Coulter Life Sciences
    22
    FEB 14, 2023 | 10:00 AM
    A spatially-resolved transcriptional atlas of the murine dorsal pontine tegmentum
    A spatially-resolved transcriptional atlas of the murine dorsal...
    Date: February 14, 2023 Time: 10:00am (PST), 1:00pm (EST), 7:00pm (CET) The dorsal pontine tegmentum (PnTg) is part of the Pons, the largest section of the brainstem. It is a complex region...
    Speaker: Stefano Nardone, PhD , Cory Brannigan
    Sponsored By: Vizgen
    6
     
     
  • NOV 17, 2022 | 7:00 AM
    Visualizing in situ single-cell multi-omic gene expression from FFPE Tissue with MERSCOPE
    Visualizing in situ single-cell multi-omic gene expression from...
    Date: November 17, 2022 Time: 7:00am (PST), 10:00am (EST), 4:00pm (CET) In order to truly understand cell biology, researchers need easy-to-use tools that preserve the natural complexity of...
    Speaker: Peter Reinhold
    Sponsored By: Vizgen
    13
    OCT 20, 2022 | 9:00 AM
    Immune Secrets of the Lymph Node Revealed by Spatial Genomics
    Immune Secrets of the Lymph Node Revealed by Spatial Genomics
    Date: October 13, 2022 Time: 11:00am (PDT), 12:00pm (EDT), 6:00pm (CEST) Single-cell atlases mapping immune cells provide hints on how immune cells mature, attenuate, and disseminate through...
    Speaker: Jason Reeves
    Sponsored By: NanoString Technologies
    10 1
    SEP 27, 2022 | 10:00 AM
    Spatial Single Cell Characterization of Alzheimer's Disease in Mouse and Human Hippocampus
    Spatial Single Cell Characterization of Alzheimer's Disease in...
    Date: September 27, 2022 Time: 10:00am (PDT), 1:00pm (EDT), 7:00pm (CEST) Alzheimer’s disease is the most common cause of dementia and the seventh leading cause of death in the United...
    Speaker: Vikram Devgan , Miranda Orr
    Sponsored By: NanoString Technologies
    10
    JUN 22, 2022 | 11:00 AM
    Analyzing Highly Multiplexed and Multi-Modal Spatial-Omics ChipCytometry™ Datasets
    Analyzing Highly Multiplexed and Multi-Modal Spatial-Omics ChipCytometry™...
    Date: June 22, 2022 Time: 11:00am (PDT), 2:00pm (EDT), 8:00pm (CEST) ChipCytometry™ is a technique for collecting and analyzing highly multiplexed spatial cytometry data that has been...
    Speaker: J. Spencer Schwarz
    Sponsored By: Canopy Biosciences
    4
    MAY 04, 2022 | 3:00 PM
    Deep Spatiotemporal Insights into COVID-19: a Multi-organ Study
    Deep Spatiotemporal Insights into COVID-19: a Multi-organ Study
    The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that emerged in late 2019 has spread globally, causing a pandemic of respiratory illness designated coronavirus disease 2019...
    Speaker: Arutha Kulasinghe, PhD
    Presented at: Coronavirus Series
    Sponsored By: NanoString Technologies
    6
     
     
  • MAY 04, 2022 | 10:30 AM
    Neuropathology of SARS-CoV-2 as Revealed by Spatial Biology
    Neuropathology of SARS-CoV-2 as Revealed by Spatial Biology
    The coronavirus SARS-CoV-2 has led to a worldwide pandemic. Beside respiratory symptoms, infected people may develop neurologic dysfunctions such as loss of smell and taste, also seizures, a...
    Speaker: Susanne Krasemann, MD, PhD
    Presented at: Coronavirus Series
    Sponsored By: NanoString Technologies
    4
    MAR 31, 2022 | 11:00 AM
    In situ single-cell transcriptomic imaging in formalin-fixed paraffin-embedded (FFPE) tissues with MERSCOPE
    In situ single-cell transcriptomic imaging in formalin-fixed paraffin-embedded...
    Date: March 31, 2022 Time: 11:00am (PDT), 2:00pm (EDT), 8:00pm (CET) Formalin-fixed paraffin-embedded (FFPE) tissues are the most widely used clinical sample types in histology and molecular...
    Speaker: Jiang He
    Sponsored By: Vizgen
    8 1
    MAR 10, 2022 | 7:30 AM
    Spatial Transcriptomic Profiling of Spiny Projection Neurons in the Mouse Striatum
    Spatial Transcriptomic Profiling of Spiny Projection Neurons in...
    NanoString has started an ambitious project called the "Spatial Organ Atlas." The goal of this initiative is to map the architecture of tissues with spatially resolved whole transc...
    Speaker: Alison VanSchoiack, PhD
    Presented at: Neuroscience Virtual Event Series 2022
    Sponsored By: NanoString Technologies
    3
    FEB 23, 2022 | 1:30 PM
    Innovative Approaches to Biomarker Discovery in the Drug Development Process
    Innovative Approaches to Biomarker Discovery in the Drug Development...
    High-throughput sequencing technology such as RNASeq and whole genome sequencing has enabled deep characterization of health and disease states. Biomarker discovery by these means has only h...
    Speaker: Esperanza Anguiano, PhD, MS-MBA
    Presented at: Drug Discovery & Development Virtual Event Series 2022
    Sponsored By: NanoString Technologies
    2
    OCT 26, 2021 | 11:00 AM
    Constructing a Spatially Resolved Single-cell Atlas of the Mouse Retina with the MERSCOPE Platform
    Constructing a Spatially Resolved Single-cell Atlas of the Mouse...
    Date: October 26, 2021 Time: 11:00am (PDT), 1:00pm (EDT) The retina is the light-sensing part of the visual system and is composed of six neuron types and several non-neuronal cell types, wi...
    Speaker: Rui Chen, B.S., Ph.D.
    Sponsored By: Vizgen
    5
     
     
  • OCT 21, 2021 | 7:00 AM
    Including Spatial Proteomics in your research - why and how
    Including Spatial Proteomics in your research - why and how
    Date: October 21, 2021 Time: 7:00am (PDT), 10:00am (EDT) To simultaneously visualize multiple markers within the same sample enables a more detailed view of cellular phenotypes and how they...
    Speaker: Charlotte
    Sponsored By: Lunaphore
    1
    OCT 13, 2021 | 10:30 AM
    Spatial Transcriptomic Profiling of Severe COVID-19 Patients
    Spatial Transcriptomic Profiling of Severe COVID-19 Patients
    Severe SARS-CoV-2 infection often leads to development of acute respiratory distress syndrome (ARDS), with profound pulmonary patho-histological changes post-mortem. In this study, we utiliz...
    Speaker: Camilla Margaroli, PhD
    Presented at: Coronavirus Series
    Sponsored By: NanoString Technologies
    2
    AUG 25, 2021 | 1:30 PM
    Spatial Context Matters: Molecular Cartography™ to Study Gene Expression Changes in the Brain
    Spatial Context Matters: Molecular Cartography™ to Study Gene...
    Technological advances such as single-cell RNA sequencing accelerated our understanding of cellular diversity in tissues. However, the ability to elucidate this cellular heterogeneity while...
    Speaker: Jeroen Aerts, PhD
    Presented at: Neuroscience Virtual Event Series 2021
    Sponsored By: Resolve Biosciences
    1
    AUG 25, 2021 | 1:30 PM
    Spatial Transcriptomics of Alzheimer's Disease Mouse Models with and Without Trem2R47H Mutation.
    Spatial Transcriptomics of Alzheimer's Disease Mouse Models with...
    In this preliminary experiment, we used spatial transcriptomics to assess the gene expression profiles of microglia or astrocytes in relation to their distance from plaques. We compared 18-m...
    Speaker: Frances Edwards, PhD
    Presented at: Neuroscience Virtual Event Series 2021
    Sponsored By: NanoString Technologies
    1
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