OCT 23, 2025 6:00 AM PDT

Gene Expression Predicts Therapeutic Efficacy

The immune system works to identify and target invading pathogens. Specifically, our bodies work to get rid of any harmful infections by employing a two-part immune response. The first wave of immunity is the innate immune system. This initial reaction is broad and non-specific with innate cells circulating throughout the body to detect foreign pathogens. These cells that are involved include neutrophils, macrophages, eosinophils, basophils, and dendritic cells. Once cells detect an issue, they alert the rest of the body to completely filter out the infection. Importantly, the second wave of immunity, or the adaptive immune system, elicits a strong, specific response that target pathogens the innate immune system cannot neutralize.

Adaptive immunity builds to generate robust protection against aggressive diseases. The cells that make up this response include B and T cells. B cells are mainly responsible for generating antibodies to neutralize and signal infections throughout the body. T cells are the drivers that get rid of disease. T cell activity destroys infected cells and other pathogens lingering throughout the body or site of infection. The adaptive immune response is also critical for immune memory. Once someone experiences a disease and recovers, adaptive immune cells will remember that pathogen next time it enters the body - this is how vaccines work. A patient is injected with a non-harmful virus to expose the immune system. Immediately, the body will respond and destroy the virus. However, a few T cells will also be generated to targeted similar viruses in the future. As a result, when a patient is exposed to the infection again, they will be protected and not experience symptoms.

T cells are critical for any disease or infection, including cancer. Many immunotherapies currently being develop involve activating and directing T cells to the site of the tumor. However, immunotherapies have limited efficacy due to various mechanisms around the tumor that suppress immunity. Scientists are working to understand T cell biology to develop better immunotherapies and more accurately predict treatment outcomes in patients.

A recent article in Nature Communications, by Dr. Satoshi Ueha and others, found how T cells expand and ways to monitor activity in the tumor.  Specifically, the team developed a method to track T cells, which provides a better understanding of how they proliferate and drive anti-tumor response. Ueha is an Associate Professor in the Institute for Biomedical Sciences at Tokyo University of Science (TUS). His research focuses on tumor immunology and inflammatory disease.

Ueha’s group developed a technique in which T cells can be sequenced or analyzed as unique barcodes. This system of analysis led scientists to track down various clones as they proliferated. As a result, results provided a dynamic overview of the T cell immune response in tumors. Further analysis revealed a specific set of gene expression markers in T cells that identified when these cells were primed to grow. While the expression of this gene set faded in most T cells, a separate subset remained and correlated with expansion properties. When the team administered immunotherapy, they found that this T cell population expanded again promoting anti-cancer immunity.

The new development of trafficking T cell expansion is groundbreaking and has the potential to improve current immunotherapy. The identified gene signature can also be used as a biomarker to evaluate immunotherapy response in T cells. Overall, these discoveries allow researchers and physicians to better treat patients and prolong survival.

Article, Nature Communications, Satoshi Ueha, TUS

About the Author
Master's (MA/MS/Other)
Greetings! I am passionate about tumor immunology, and love to update individuals on the new research coming out by talented scientists. The views expressed on this platform (Labroots) and in my writing are my own and do not reflect views of my employer.
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