MAY 12, 2016 9:00 AM PDT

Keynote: Planet Scale Analysis with Millions of Genomes

Speaker

Abstract

As millions of people all over the world get their genome sequenced, physicians and researchers as well as the individuals themselves will want to ask questions of these data. To ask questions at a planet scale, however, we must re-imagine the computational and storage infrastructure required. We also need a consistent naming scheme for parts of the genome. To address this we invented tiling – a technique that divides the genome into about 10 million overlapping, variable-length sequences, or “tiles”, each with a unique 24-base tag at each end. We use examples from public data to show tiling supports simple and consistent names, annotation, queries, machine learning,
and clinical screening.    Someday soon the general public may get to
know the tiles in their own genomes, while researchers and doctors may use the information to realize precision medicine.

  • Learn about free and open source software (FOSS), open-standards and open-data that can help you build necessary informatics infrastructure
  • Use Tiling to facilitate planet scale analyses of genomic data

Show Resources
You May Also Like
JUN 21, 2022 6:00 AM PDT
JUN 21, 2022 6:00 AM PDT
Date: June 21, 2022 Time: 6:00am (PDT), 9:00am (EDT), 3:00pm (CEST) The global understanding and practice of medicine is currently undergoing a revolutionary change. This shift to precision...
JUL 19, 2022 8:00 AM PDT
JUL 19, 2022 8:00 AM PDT
Date: July 19, 2022 Time: 8:00am (PDT), 11:00pm (EDT), 5:00pm (CEST) Traditional liver perfusion procedures are difficult to perform and require extensive training, steady hands, and long-st...
JUN 28, 2022 6:45 AM PDT
JUN 28, 2022 6:45 AM PDT
Date: June 28, 2022 Time: 3:00pm (BST), 4:00pm (CET), 9:00am (CST), 7am (PST) Light-sheet microscopy is an extremely versatile imaging technique with a vast range of implementations that are...
MAY 17, 2022 9:00 AM PDT
MAY 17, 2022 9:00 AM PDT
Date: May 17, 2022 Time: 9:00am (PDT), 12:00pm (EDT), 8:00pm (CEST) Gene therapeutics have great potential to treat many severe diseases in an unprecedented, targeted manner. The biopharmace...
MAR 23, 2022 11:00 AM PDT
MAR 23, 2022 11:00 AM PDT
Date: March 23, 2021 Time: 11:00am (PDT), 2:00pm (EDT), 8:00pm (CEDT) In this presentation, Dr. Middleton will review the development and deployment of large-scale saliva-based COVID-19 test...
APR 28, 2022 8:00 AM PDT
APR 28, 2022 8:00 AM PDT
Date: April 28, 2022 Time: 8:00am (PDT), 11:00am (EDT), 5:00pm (CEST) Human pluripotent stem cells (PSCs) and their derivatives hold great potentials in...
MAY 12, 2016 9:00 AM PDT

Keynote: Planet Scale Analysis with Millions of Genomes



Show Resources
Loading Comments...
Show Resources
Attendees