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    Microbiomics

    The microbiome describes the microorganisms, including bacteria, fungi, and viruses, that live in any particular environment. Microbiomics is the study of data relating to a microbiome. Microbiomics is used to characterize the components required to support the structure and function of the microbiome.

    Webinars

    • JUN 02, 2022 | 8:00 AM
      From pathogen identification to disease prevention and cure: understanding how Sanger sequencing and fragment analysis is powering infectious disease research today
      From pathogen identification to disease prevention and cure: understanding...
      Infectious diseases present a great challenge to global health and its economy. The 2020 SARS- CoV-2 pandemic highlighted the importance of rapid identification, characterization and surveil...
      Speaker: Dr. Archana Gupta
      Sponsored By: Thermo Fisher Scientific
      16
      MAY 04, 2022 | 1:30 PM
      Panel Presentation: Optimized Sample Processing and NGS Techniques for Wastewater-Monitoring of SARS-CoV-2
      Panel Presentation: Optimized Sample Processing and NGS Techniques...
      Wastewater samples are challenging substrates for nucleic acid extraction, and choice of extraction method will determine the success of downstream analysis. Extraction methods must be able...
      Speaker: Jonathan Shaffer, PhD, MBA , Dominic O'Neil, MS, MBA
      Presented at: Coronavirus Series
      Sponsored By: QIAGEN
      3
      APR 28, 2022 | 9:00 AM
      Beyond infection prevention and control: How genome sequencing of AMR pathogens can improve antibiotic stewardship and patient care
      Beyond infection prevention and control: How genome sequencing...
      Date: April 28, 2022 Time: 9:00am (PDT), 12:00pm (EDT), 6:00pm (CET) During previous webinars we have discussed the global impact of antimicrobial resistance (AMR) infections, explored biolo...
      Speaker: Dr. Arne Materna
      Sponsored By: OpGen
      11
      MAR 23, 2022 | 1:30 PM
      Microbe Ubiquity: The Myth of Sterile Cultivation Systems
      Microbe Ubiquity: The Myth of Sterile Cultivation Systems
      There is much discussion by cannabis growers about the prevention of plant diseases, oftentimes circling back to the idea of curating a sterile cultivation system. However, keeping microbial...
      Speaker: Michael J. DiLegge, MSc
      Presented at: Cannabis Sciences Virtual Event Series 2022
      1
      MAR 09, 2022 | 8:00 AM
      Biosecurity for Genome Engineering: Safety First and the SeqScreen Solution for Functional Predictions
      Biosecurity for Genome Engineering: Safety First and the SeqScreen...
      Date: March 09, 2021 Time: 08:00am (PST), 11:00am (EST), 5:00pm (CEST) Bioengineering technologies hold enormous potential to solve many of our world’s pressing problems. However, they...
      Speaker: Todd Treangen, PhD , Krista Ternus, PhD, PMP , Beth Vitalis, PhD
      Sponsored By: Inscripta
      5
      DEC 09, 2021 | 11:00 AM
      Surveillance and AI-Powered Prediction of AMR to Inform Antibiotic Therapy
      Surveillance and AI-Powered Prediction of AMR to Inform Antibiotic...
      Date: December 09, 2021 Time: 11:00am (PDT), 2:00pm (EDT) The burden of antimicrobial resistance (AMR) has been acknowledged worldwide by leading health institutes. Besides the need for new...
      Speaker: Dr. Arne Materna
      Sponsored By: OpGen
      7
      NOV 30, 2021 | 7:00 AM
      A Fast and Reliable Method for SARS-CoV-2 Wastewater Surveillance
      A Fast and Reliable Method for SARS-CoV-2 Wastewater Surveillance
      Date: November 30, 2021 Time: 7:00am (PDT), 10:00am (EDT) Wastewater Surveillance programs for SARS-CoV-2 are being implemented by health authorities globally. Many laboratories are currentl...
      Speaker: Subhanjan Mondal , Carlotta Olivero
      Sponsored By: Promega
      8 1
      NOV 16, 2021 | 10:00 AM
      Towards a mechanistic understanding of motile and primary cilia with CLEM and cryo-electron tomography and expansion microscopy
      Towards a mechanistic understanding of motile and primary cilia...
      Date: November 16, 2021 Time: 10:00am PDT In this talk I will show how the power of modern electron microscopy (EM) techniques, coupled with light microscopy and expansion methods, can open...
      Speaker: Gaia Pigino
      Presented at: Thermo Fisher Scientific - Electron Microscopy Webinars
      Sponsored By: Thermo Fisher Scientific
      1
      NOV 08, 2021 | 8:00 AM
      Learn how to maximize KingFisher instruments to automate DNA, RNA, proteins & cells for all applications
      Learn how to maximize KingFisher instruments to automate DNA,...
      Date: November 8, 2021 Time: 8:00am (PDT), 11:00am (EDT) Explore the adaptability of your KingFisher instrument. Discover all the ways your Thermo Scientific™ KingFisher™ system...
      Speaker: Ketil Pedersen, Ph.D , Emily Zeringer , Suraj Patel, Ph.D.
      Sponsored By: Thermo Fisher Scientific
      9
      OCT 13, 2021 | 1:30 PM
      Panel Presentation: Advantage of Absolute Quantification of Digital PCR in Wastewater Monitoring QIAGEN's Workflow Solutions for SARS-CoV-2 Surveillance
      Panel Presentation: Advantage of Absolute Quantification of Digital...
      One significant challenge with SARS-CoV-2 wastewater monitoring is the lack of optimized and standardized sample processing steps, from sample collection to RNA detection. Viral concentratio...
      Speaker: Dominic O'Neil, MS, MBA , Colin Donohoe, PhD
      Presented at: Coronavirus Series
      Sponsored By: QIAGEN
      1
      OCT 12, 2021 | 9:00 AM
      An overview and demonstration of SCIEX Biologics Explorer software for biologics characterization
      An overview and demonstration of SCIEX Biologics Explorer software...
      Date: October 12, 2021 Time: 9:00am (PDT), 12:00pm (EDT) SCIEX’s next-generation Biologics Explorer software is an innovative platform for the comprehensive and deep characterization o...
      Speaker: Mona Hamada, Ph.D. , Stephen Sciuto, Ph.D.
      Sponsored By: SCIEX
      6
      SEP 28, 2021 | 9:00 AM
      New method for standardized, high-throughput PBMC isolation from blood samples for observational and clinical studies
      New method for standardized, high-throughput PBMC isolation from...
      Date: September 28, 2021 Time: 9:00am (PDT), 12:00pm (EDT) Standardization and reproducibility are prerequisites for peripheral blood mononuclear cell (PBMC) generation from donor or patient...
      Speaker: Lotta Raty , Dr. Steffen Rapp , PhD
      Sponsored By: Miltenyi Biotec
      10 1
      SEP 14, 2021 | 7:00 AM
      What prevents you from increasing your PCR productivity?
      What prevents you from increasing your PCR productivity?
      Date: September 14, 2021 Time: 7am PDT, 10am EDT, 4pm CEST A conventional thermal cycler has long been a commodity product in the lab and end-point PCR techniques can be completed almost wit...
      Speaker: Arora Phang, PhD
      Sponsored By: Eppendorf
      24 1
      SEP 09, 2021 | 12:00 AM
      Log-linear Model for Modeling for Biases in Microbiome Studies
      Log-linear Model for Modeling for Biases in Microbiome Studies
      Microbiome sequencing data are known to be biased; the measured taxa relative abundances can be systematically distorted from their true values at every step in the experimental/analysis wor...
      Speaker: Ni Zhao, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      2
      SEP 09, 2021 | 12:00 AM
      Development of Capture Sequencing Assays for Enhanced Detection and Genotyping of Tick-borne Pathogens and Infectious Vertebrate Viruses
      Development of Capture Sequencing Assays for Enhanced Detection...
      Early detection is critical for prompt and effective treatment of acute infectious diseases. For tick-borne diseases (TBD), the lack of accurate early diagnosis can result in delayed treatme...
      Speaker: Komal Jain, M.Sc., MS
      Presented at: Microbiology Week Virtual Event Series 2021
      1
      SEP 08, 2021 | 10:30 AM
      A CRISPR-Powered Universal Infectious Disease Assay
      A CRISPR-Powered Universal Infectious Disease Assay
      Varicella zoster virus (VZV) causes two clinically distinct forms of disease, varicella and herpes zoster. These forms can each present with multiple manifestations ranging from lesions incl...
      Speaker: Jon Armstrong, MSc
      Presented at: Microbiology Week Virtual Event Series 2021
      Sponsored By: Jumpcode Genomics
      0
      SEP 08, 2021 | 7:30 AM
      Keynote Presentation: Viromics: Lessons from the Oceans, Soils, and Humans
      Keynote Presentation: Viromics: Lessons from the Oceans, Soils,...
      Microbes are recently recognized as driving the energy and nutrient transformations that fuel Earth’s ecosystems in soils, oceans and humans. Where studied, viruses appear to modulate...
      Speaker: Matthew Sullivan, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      1
      SEP 08, 2021 | 12:00 AM
      Gut Microbiota in maternal-infant populations with HIV
      Gut Microbiota in maternal-infant populations with HIV
      The gut microbiota has been proposed to affect the risk and prognosis of various health outcomes. Related to pregnancy, existing studies suggest that pregnant women have a distinct microbiot...
      Speaker: Rupak Shivakoti, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      0
      SEP 08, 2021 | 12:00 AM
      Machine Learning Approaches for Modeling Complex Community Dynamics
      Machine Learning Approaches for Modeling Complex Community Dynamics
      Computational or mathematical modeling generally refers to a mechanism-based formalism that help us test hypotheses, expand our understanding of a system, or make mechanism-aware predictions...
      Speaker: Nicholas Chia, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      0
      SEP 08, 2021 | 12:00 AM
      Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty to Pharmaceutical and Clinical Application(s)
      Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty...
      The Human Microbiome Project was conceived almost 15 years ago, as an extension of the Human Genome Project, to explore the diversity of human-associated microorganisms at multiple body site...
      Speaker: Ramy K. Aziz, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      1
      SEP 08, 2021 | 12:00 AM
      High-precision Microbial Diagnostics From Sequencing Data
      High-precision Microbial Diagnostics From Sequencing Data
      Genetic Molecular Surveillance is a key component of a modern public health toolkit. This talk will detail the molecular microbial make up of urban environments. It will discuss how these en...
      Speaker: David C. Danko, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      3
      JUL 15, 2021 | 9:00 AM
      Veranome Webinar Series:  Highly Multiplexed Analysis of Mouse Neural Tissues
      Veranome Webinar Series: Highly Multiplexed Analysis of Mouse...
      Date: July 15, 2021 Time: 9:00am (PDT), 12:00pm (EDT) The Pisces workflow robust, easy-to-use, end-to-end multi-omics solution for highly multiplexed targeted Spatial RNA analysis. VeranomeB...
      Speaker: Brian Hilbush, Ph.D.
      Sponsored By: Veranome Biosystems
      9
      JUN 22, 2021 | 10:00 AM
      Can AI powered diagnostics revolutionize antimicrobial stewardship? Machine learning based prediction of antimicrobial resistance (AMR) in short and long read sequencing data
      Can AI powered diagnostics revolutionize antimicrobial stewardship?...
      Date: June 22, 2021 Time: 10:00am (PDT), 1:00pm (EDT) Antimicrobial resistance (AMR) has emerged as one of the principal public health problems of the 21st century. It threatens the effectiv...
      Speaker: Dr. Arne Materna
      Sponsored By: OpGen, Inc.
      7
      JUN 08, 2021 | 9:00 AM
      Innovations in Vaccine Research and Development
      Innovations in Vaccine Research and Development
      Date: June 8, 2021 Time: 9:00am PDT Reducing the spread of highly infectious and deadly diseases within the population, vaccine development is crucial in saving millions of lives each year....
      Speaker: Laura Chapman , Ketil Pedersen, Ph.D , Alexander "Sasha" Vlassov , Matt Mckenna
      Sponsored By: Thermo Fisher Scientific
      28 4
    JUN 02, 2022 | 8:00 AM
    From pathogen identification to disease prevention and cure: understanding how Sanger sequencing and fragment analysis is powering infectious disease research today
    From pathogen identification to disease prevention and cure: understanding...
    Infectious diseases present a great challenge to global health and its economy. The 2020 SARS- CoV-2 pandemic highlighted the importance of rapid identification, characterization and surveil...
    Speaker: Dr. Archana Gupta
    Sponsored By: Thermo Fisher Scientific
    16
    MAY 04, 2022 | 1:30 PM
    Panel Presentation: Optimized Sample Processing and NGS Techniques for Wastewater-Monitoring of SARS-CoV-2
    Panel Presentation: Optimized Sample Processing and NGS Techniques...
    Wastewater samples are challenging substrates for nucleic acid extraction, and choice of extraction method will determine the success of downstream analysis. Extraction methods must be able...
    Speaker: Jonathan Shaffer, PhD, MBA , Dominic O'Neil, MS, MBA
    Presented at: Coronavirus Series
    Sponsored By: QIAGEN
    3
    APR 28, 2022 | 9:00 AM
    Beyond infection prevention and control: How genome sequencing of AMR pathogens can improve antibiotic stewardship and patient care
    Beyond infection prevention and control: How genome sequencing...
    Date: April 28, 2022 Time: 9:00am (PDT), 12:00pm (EDT), 6:00pm (CET) During previous webinars we have discussed the global impact of antimicrobial resistance (AMR) infections, explored biolo...
    Speaker: Dr. Arne Materna
    Sponsored By: OpGen
    11
    MAR 23, 2022 | 1:30 PM
    Microbe Ubiquity: The Myth of Sterile Cultivation Systems
    Microbe Ubiquity: The Myth of Sterile Cultivation Systems
    There is much discussion by cannabis growers about the prevention of plant diseases, oftentimes circling back to the idea of curating a sterile cultivation system. However, keeping microbial...
    Speaker: Michael J. DiLegge, MSc
    Presented at: Cannabis Sciences Virtual Event Series 2022
    1
    MAR 09, 2022 | 8:00 AM
    Biosecurity for Genome Engineering: Safety First and the SeqScreen Solution for Functional Predictions
    Biosecurity for Genome Engineering: Safety First and the SeqScreen...
    Date: March 09, 2021 Time: 08:00am (PST), 11:00am (EST), 5:00pm (CEST) Bioengineering technologies hold enormous potential to solve many of our world’s pressing problems. However, they...
    Speaker: Todd Treangen, PhD , Krista Ternus, PhD, PMP , Beth Vitalis, PhD
    Sponsored By: Inscripta
    5
     
     
  • DEC 09, 2021 | 11:00 AM
    Surveillance and AI-Powered Prediction of AMR to Inform Antibiotic Therapy
    Surveillance and AI-Powered Prediction of AMR to Inform Antibiotic...
    Date: December 09, 2021 Time: 11:00am (PDT), 2:00pm (EDT) The burden of antimicrobial resistance (AMR) has been acknowledged worldwide by leading health institutes. Besides the need for new...
    Speaker: Dr. Arne Materna
    Sponsored By: OpGen
    7
    NOV 30, 2021 | 7:00 AM
    A Fast and Reliable Method for SARS-CoV-2 Wastewater Surveillance
    A Fast and Reliable Method for SARS-CoV-2 Wastewater Surveillance
    Date: November 30, 2021 Time: 7:00am (PDT), 10:00am (EDT) Wastewater Surveillance programs for SARS-CoV-2 are being implemented by health authorities globally. Many laboratories are currentl...
    Speaker: Subhanjan Mondal , Carlotta Olivero
    Sponsored By: Promega
    8 1
    NOV 16, 2021 | 10:00 AM
    Towards a mechanistic understanding of motile and primary cilia with CLEM and cryo-electron tomography and expansion microscopy
    Towards a mechanistic understanding of motile and primary cilia...
    Date: November 16, 2021 Time: 10:00am PDT In this talk I will show how the power of modern electron microscopy (EM) techniques, coupled with light microscopy and expansion methods, can open...
    Speaker: Gaia Pigino
    Presented at: Thermo Fisher Scientific - Electron Microscopy Webinars
    Sponsored By: Thermo Fisher Scientific
    1
    NOV 08, 2021 | 8:00 AM
    Learn how to maximize KingFisher instruments to automate DNA, RNA, proteins & cells for all applications
    Learn how to maximize KingFisher instruments to automate DNA,...
    Date: November 8, 2021 Time: 8:00am (PDT), 11:00am (EDT) Explore the adaptability of your KingFisher instrument. Discover all the ways your Thermo Scientific™ KingFisher™ system...
    Speaker: Ketil Pedersen, Ph.D , Emily Zeringer , Suraj Patel, Ph.D.
    Sponsored By: Thermo Fisher Scientific
    9
    OCT 13, 2021 | 1:30 PM
    Panel Presentation: Advantage of Absolute Quantification of Digital PCR in Wastewater Monitoring QIAGEN's Workflow Solutions for SARS-CoV-2 Surveillance
    Panel Presentation: Advantage of Absolute Quantification of Digital...
    One significant challenge with SARS-CoV-2 wastewater monitoring is the lack of optimized and standardized sample processing steps, from sample collection to RNA detection. Viral concentratio...
    Speaker: Dominic O'Neil, MS, MBA , Colin Donohoe, PhD
    Presented at: Coronavirus Series
    Sponsored By: QIAGEN
    1
     
     
  • OCT 12, 2021 | 9:00 AM
    An overview and demonstration of SCIEX Biologics Explorer software for biologics characterization
    An overview and demonstration of SCIEX Biologics Explorer software...
    Date: October 12, 2021 Time: 9:00am (PDT), 12:00pm (EDT) SCIEX’s next-generation Biologics Explorer software is an innovative platform for the comprehensive and deep characterization o...
    Speaker: Mona Hamada, Ph.D. , Stephen Sciuto, Ph.D.
    Sponsored By: SCIEX
    6
    SEP 28, 2021 | 9:00 AM
    New method for standardized, high-throughput PBMC isolation from blood samples for observational and clinical studies
    New method for standardized, high-throughput PBMC isolation from...
    Date: September 28, 2021 Time: 9:00am (PDT), 12:00pm (EDT) Standardization and reproducibility are prerequisites for peripheral blood mononuclear cell (PBMC) generation from donor or patient...
    Speaker: Lotta Raty , Dr. Steffen Rapp , PhD
    Sponsored By: Miltenyi Biotec
    10 1
    SEP 14, 2021 | 7:00 AM
    What prevents you from increasing your PCR productivity?
    What prevents you from increasing your PCR productivity?
    Date: September 14, 2021 Time: 7am PDT, 10am EDT, 4pm CEST A conventional thermal cycler has long been a commodity product in the lab and end-point PCR techniques can be completed almost wit...
    Speaker: Arora Phang, PhD
    Sponsored By: Eppendorf
    24 1
    SEP 09, 2021 | 12:00 AM
    Log-linear Model for Modeling for Biases in Microbiome Studies
    Log-linear Model for Modeling for Biases in Microbiome Studies
    Microbiome sequencing data are known to be biased; the measured taxa relative abundances can be systematically distorted from their true values at every step in the experimental/analysis wor...
    Speaker: Ni Zhao, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    2
    SEP 09, 2021 | 12:00 AM
    Development of Capture Sequencing Assays for Enhanced Detection and Genotyping of Tick-borne Pathogens and Infectious Vertebrate Viruses
    Development of Capture Sequencing Assays for Enhanced Detection...
    Early detection is critical for prompt and effective treatment of acute infectious diseases. For tick-borne diseases (TBD), the lack of accurate early diagnosis can result in delayed treatme...
    Speaker: Komal Jain, M.Sc., MS
    Presented at: Microbiology Week Virtual Event Series 2021
    1
     
     
  • SEP 08, 2021 | 10:30 AM
    A CRISPR-Powered Universal Infectious Disease Assay
    A CRISPR-Powered Universal Infectious Disease Assay
    Varicella zoster virus (VZV) causes two clinically distinct forms of disease, varicella and herpes zoster. These forms can each present with multiple manifestations ranging from lesions incl...
    Speaker: Jon Armstrong, MSc
    Presented at: Microbiology Week Virtual Event Series 2021
    Sponsored By: Jumpcode Genomics
    0
    SEP 08, 2021 | 7:30 AM
    Keynote Presentation: Viromics: Lessons from the Oceans, Soils, and Humans
    Keynote Presentation: Viromics: Lessons from the Oceans, Soils,...
    Microbes are recently recognized as driving the energy and nutrient transformations that fuel Earth’s ecosystems in soils, oceans and humans. Where studied, viruses appear to modulate...
    Speaker: Matthew Sullivan, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    1
    SEP 08, 2021 | 12:00 AM
    Gut Microbiota in maternal-infant populations with HIV
    Gut Microbiota in maternal-infant populations with HIV
    The gut microbiota has been proposed to affect the risk and prognosis of various health outcomes. Related to pregnancy, existing studies suggest that pregnant women have a distinct microbiot...
    Speaker: Rupak Shivakoti, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    0
    SEP 08, 2021 | 12:00 AM
    Machine Learning Approaches for Modeling Complex Community Dynamics
    Machine Learning Approaches for Modeling Complex Community Dynamics
    Computational or mathematical modeling generally refers to a mechanism-based formalism that help us test hypotheses, expand our understanding of a system, or make mechanism-aware predictions...
    Speaker: Nicholas Chia, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    0
    SEP 08, 2021 | 12:00 AM
    Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty to Pharmaceutical and Clinical Application(s)
    Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty...
    The Human Microbiome Project was conceived almost 15 years ago, as an extension of the Human Genome Project, to explore the diversity of human-associated microorganisms at multiple body site...
    Speaker: Ramy K. Aziz, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    1
     
     
  • SEP 08, 2021 | 12:00 AM
    High-precision Microbial Diagnostics From Sequencing Data
    High-precision Microbial Diagnostics From Sequencing Data
    Genetic Molecular Surveillance is a key component of a modern public health toolkit. This talk will detail the molecular microbial make up of urban environments. It will discuss how these en...
    Speaker: David C. Danko, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    3
    JUL 15, 2021 | 9:00 AM
    Veranome Webinar Series:  Highly Multiplexed Analysis of Mouse Neural Tissues
    Veranome Webinar Series: Highly Multiplexed Analysis of Mouse...
    Date: July 15, 2021 Time: 9:00am (PDT), 12:00pm (EDT) The Pisces workflow robust, easy-to-use, end-to-end multi-omics solution for highly multiplexed targeted Spatial RNA analysis. VeranomeB...
    Speaker: Brian Hilbush, Ph.D.
    Sponsored By: Veranome Biosystems
    9
    JUN 22, 2021 | 10:00 AM
    Can AI powered diagnostics revolutionize antimicrobial stewardship? Machine learning based prediction of antimicrobial resistance (AMR) in short and long read sequencing data
    Can AI powered diagnostics revolutionize antimicrobial stewardship?...
    Date: June 22, 2021 Time: 10:00am (PDT), 1:00pm (EDT) Antimicrobial resistance (AMR) has emerged as one of the principal public health problems of the 21st century. It threatens the effectiv...
    Speaker: Dr. Arne Materna
    Sponsored By: OpGen, Inc.
    7
    JUN 08, 2021 | 9:00 AM
    Innovations in Vaccine Research and Development
    Innovations in Vaccine Research and Development
    Date: June 8, 2021 Time: 9:00am PDT Reducing the spread of highly infectious and deadly diseases within the population, vaccine development is crucial in saving millions of lives each year....
    Speaker: Laura Chapman , Ketil Pedersen, Ph.D , Alexander "Sasha" Vlassov , Matt Mckenna
    Sponsored By: Thermo Fisher Scientific
    28 4
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