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    Microbiomics

    The microbiome describes the microorganisms, including bacteria, fungi, and viruses, that live in any particular environment. Microbiomics is the study of data relating to a microbiome. Microbiomics is used to characterize the components required to support the structure and function of the microbiome.

    Webinars

    • MAY 27, 2021 | 11:00 AM
      Planning to Succeed - How and where standardization can improve your microbiome studies
      Planning to Succeed - How and where standardization can improve...
      Date: May 27, 2021 Time: 11:00am PDT, 2:00pm EDT Microbiome studies often suffer from issues that recent technological advances can solve easily. In this seminar, we will walk through planni...
      Speaker: Dr. Julia Cope, PhD.
      Sponsored By: Mawi DNA Technologies
      7 3
      MAY 18, 2021 | 8:00 AM
      Avoiding hurdles in molecular assay development
      Avoiding hurdles in molecular assay development
      Date: May 18, 2021 Time: 8:00am (PST) The global pandemic has caused an increased focus and scrutiny on molecular diagnostic assay development, resulting in a need for assays that provide qu...
      Speaker: Naeem Nathoo
      Sponsored By: Thermo Fisher Scientific
      7 2
      MAY 11, 2021 | 10:00 AM
      Secure Your Next Great Discovery
      Secure Your Next Great Discovery
      Date: May 11, 2021 Time: 10:00zm PDT Your samples are some of the most valuable assets in the laboratory. After spending countless hours on extraction and preparation, your conclusions could...
      Speaker: Paulina Kocjan , Kate Meola , Zareh Zurabyan
      Presented at: Eppendorf Planet of Knowledge - A New Dimension
      Sponsored By: Eppendorf
      8
      MAY 05, 2021 | 12:00 AM
      Microbiomes after Death
      Microbiomes after Death
      The postmortem microbiome is an emerging field in forensic science with broad application for death investigation (e.g., time since death). While the foundation for forensic microbiology beg...
      Speaker: Jennifer Pechal, PhD
      Presented at: Forensic Sciences Virtual Event Series 2021
      1
      APR 21, 2021 | 12:00 AM
      Hybrid Capture SARS-CoV-2 NGS Assay and COVID-Dx: a robust end to end solution for viral detection and surveillance of genetic variants
      Hybrid Capture SARS-CoV-2 NGS Assay and COVID-Dx: a robust end...
      As the SARS-CoV-2 continues to spread and evolve and vaccination efforts are under way, countries around the world are confronting new public health challenges due to the emergence and rapid...
      Speaker: Mara Couto-Rodriguez
      Presented at: Genetics Week Virtual Event Series 2021
      1
      APR 20, 2021 | 6:00 AM
      Panel Presentation: Accelerating SARS-CoV-2 genomic surveillance with a new high-throughput NGS solution
      Panel Presentation: Accelerating SARS-CoV-2 genomic surveillance...
      Since late 2020, several prominent SARS-CoV-2 variants of concern have emerged harboring specific mutations which increase viral transmissibility (e.g., lineage B.1.1.7), and which appear to...
      Speaker: Brian Dugan, M.S. , Fernando Spikli, PhD
      Presented at: Genetics Week Virtual Event Series 2021
      Sponsored By: QIAGEN
      1
      APR 20, 2021 | 12:00 AM
      C.E. CREDITS
      Low error rate long-reads enable the identification of long variant haplotypes in metagenome assemblies
      Low error rate long-reads enable the identification of long variant...
      Microbial communities include distinct lineages of closely related organisms which have proved challenging to separate in metagenomic assembly. Challenges include the existence of highly rel...
      Speaker: Derek Bickhart, PhD
      Presented at: Genetics Week Virtual Event Series 2021
      2
      FEB 24, 2021 | 10:00 AM
      Biosafety Enclosures and the Automated Lab: Steps for Success
      Biosafety Enclosures and the Automated Lab: Steps for Success
      DATE: February 24, 2021 TIME: 10am PST Automated lab instruments such as liquid handlers and cell sorters are increasingly common in all types of laboratories, driving fast results for labor...
      Speaker: David Wasescha , Simon Fogarty
      Sponsored By: Labconco
      15
      DEC 15, 2020 | 10:00 AM
      Prep for Success: From human microbiome exploration to advanced SARS-CoV-2 testing in wastewater
      Prep for Success: From human microbiome exploration to advanced...
      DATE: December 15, 2020 TIME: 10:00am PST Scientists from Thermo Fisher Scientific will walk us through the world of microorganisms. They will discuss their most recent research on viruses,...
      Speaker: Sasha Vlassov, PhD , Jasti Madhu , Emily Zeringer
      Sponsored By: Thermo Fisher Scientific
      13
      DEC 03, 2020 | 4:30 PM
      An Iterative Approach to Structure-based in silico to in vivo Development of Combinatorial Anti-SARS-CoV-2 Therapy
      An Iterative Approach to Structure-based in silico to in vivo...
      This drug development program is designed to create a family of broad-spectrum, pan-coronaviral drugs that respectively inhibit multiple key enzymes required for viral replication. By target...
      Speaker: Garth Ehrlich, PhD, FAAAS
      Presented at: Coronavirus Series
      5
      DEC 03, 2020 | 12:00 AM
      Recent insights into SARS-CoV-2 intra-host population dynamics
      Recent insights into SARS-CoV-2 intra-host population dynamics
      The fast spread and deadliness of SARS-CoV-2 has sparked much interest in understanding the underlying genomics and evolutionary patterns of this 30,000bp Coronavirus. Since the first report...
      Speaker: Todd Treangen, PhD
      Presented at: Coronavirus Series
      3 1
      DEC 02, 2020 | 8:00 AM
      Optimize your bioprocess - From shaker to bioreactor
      Optimize your bioprocess - From shaker to bioreactor
      DATE: December 2nd, 2020 TIME: 08:00am PDT, 11:00pm EDT Bioreactors and shakers are used to cultivate microorganisms, plant, insect, and mammalian cells in different volumes. Upscaling of pr...
      Speaker: Ines Hartmann , David Solbach
      Sponsored By: Eppendorf
      11
      OCT 09, 2020 | 8:00 AM
      The Expanding Role of Diagnostic Next Generation Sequencing (NGS) in the Clinical Microbiology Laboratory
      The Expanding Role of Diagnostic Next Generation Sequencing (NGS)...
      DATE: October 09, 2020 TIME: 08:00am PT Traditional culture techniques, as the primary diagnostic tool for infectious diseases, are coming under scrutiny for failing to universally detect in...
      Speaker: Joseph John, Jr., MD, FIDSA , Michael Schmidt, Ph.D. FAAM, FACD
      Sponsored By: MicroGenDX
      16
      SEP 23, 2020 | 10:30 AM
      iPSC- and patient- derived intestinal organoids for gastrointestinal research
      iPSC- and patient- derived intestinal organoids for gastrointestinal...
      Intestinal organoids are self-organizing, 3D structures derived from either pluripotent stem cells or from primary tissues with the abiltiy to recapitulate some of the spatial architecture a...
      Speaker: Kevin Su
      Presented at: Cell Biology Virtual Event Series 2020
      Sponsored By: MilliporeSigma
      2
      SEP 17, 2020 | 12:00 AM
      The detection, characterization, and surveillance of the SARS-CoV-2 viral genome using hybridization capture-based NGS assay
      The detection, characterization, and surveillance of the SARS-CoV-2...
      As the spread of infectious diseases, current pandemic, and growing antimicrobial resistance (AMR) continues globally, next-generation sequencing (NGS) became a tool to diagnose infectious d...
      Speaker: Dorottya Nagy-Szakal, MD PhD
      Presented at: Coronavirus Series
      1
      SEP 10, 2020 | 3:00 PM
      Plant Microbiome: Harnessing Core Microbiome for Sustainable Agricultures
      Plant Microbiome: Harnessing Core Microbiome for Sustainable Agricultures
      While global demand for food is expected to increase significantly (70% by 2050), the agricultural industry is suffering from a decline in soil fertility, the adverse effects of climate chan...
      Speaker: Brajesh Singh
      Presented at: Microbiology Week Virtual Event Series 2020
      Sponsored By: QIAGEN
      3
      SEP 10, 2020 | 2:00 PM
      Dynamic live yeast and bacterial cell imaging using CellASIC ONIX2 microfluidic platform
      Dynamic live yeast and bacterial cell imaging using CellASIC ONIX2...
      While live cell imaging offers advantages over traditional static imaging, this approach has been challenging for studying microbes due to the difficulty in tracking very small cells in a si...
      Speaker: Cindy Chen, PhD
      Presented at: Microbiology Week Virtual Event Series 2020
      Sponsored By: MilliporeSigma
      1
      SEP 10, 2020 | 1:00 PM
      Keynote Presentation: Evolution of host-specific virulence in an RNA virus of Pacific salmonid fish
      Keynote Presentation: Evolution of host-specific virulence in...
      In Pacific Northwest watersheds several species of Pacific salmonid fishes are hosts for the rhabdovirus infectious hematopoietic necrosis virus (IHNV). In this multi-host ecosystem speciali...
      Speaker: Gael Kurath, PhD
      Presented at: Microbiology Week Virtual Event Series 2020
      1
      SEP 10, 2020 | 12:00 PM
      Bacterial strain typing and genomics characterization of multi-drug resistance with QIAGEN CLC Genomics Workbench
      Bacterial strain typing and genomics characterization of multi-drug...
      In this webinar, we will present QIAGEN CLC Genomics Workbench and its utility for bacterial isolate identification, strain discrimination using core genome multi-locus typing (cgMLST) and d...
      Speaker: Jonathan Jacobs, PhD
      Presented at: Microbiology Week Virtual Event Series 2020
      Sponsored By: QIAGEN
      2
      SEP 10, 2020 | 11:00 AM
      Optimizing the extraction of human microbiome samples
      Optimizing the extraction of human microbiome samples
      Learning Objectives: 1. Understand the challenges of extracting DNA from human samples for microbiome analysis, and learn about the best technologies for accomplishing this 2. Learn about pr...
      Speaker: Dominic O'Neil, MS, MBA
      Presented at: Microbiology Week Virtual Event Series 2020
      Sponsored By: QIAGEN
      2
      SEP 10, 2020 | 10:00 AM
      Keynote Presentation: Squeezing out understanding from sequences: Genome to Phenome Connections in Viruses of Microbes
      Keynote Presentation: Squeezing out understanding from sequences:...
      Enigmatic and often vilified, viruses are now known to play important and possibly indispensable roles in the biology and ecology of cellular organisms. Evidence of viral impacts are everywh...
      Speaker: K. Eric Wommack
      Presented at: Microbiology Week Virtual Event Series 2020
      1
      SEP 10, 2020 | 9:00 AM
      Congenital Cytomegalovirus - An Unrecognized and Preventable Problem: Fundamentals of Prevention, Diagnosis and Management
      Congenital Cytomegalovirus - An Unrecognized and Preventable Problem:...
      Congenital CMV is the most frequent infectious cause of neonatal malformation in developed nations. It is more prevalent than other neonatal conditions such as spina bifida and Down syndrome...
      Speaker: William Rawlinson, PhD
      Presented at: Microbiology Week Virtual Event Series 2020
      Sponsored By: Diasorin
      3
      SEP 10, 2020 | 7:30 AM
      Keynote Presentation: Discovery of a gene-microbiome interaction in lung cancer: lessons learned and future directions
      Keynote Presentation: Discovery of a gene-microbiome interaction...
      The selective pressure placed on the resident microbiota by local changes in the host environment – DNA damage, chronic inflammation, metabolic shifts, barrier damage, reduced immunosu...
      Speaker: K. Leigh Greathouse, PhD, MPH, MS, RD
      Presented at: Microbiology Week Virtual Event Series 2020
      3
      SEP 10, 2020 | 6:00 AM
      Structure-guided design of SARS-CoV-2 antivirals
      Structure-guided design of SARS-CoV-2 antivirals
      Coronavirus disease 2019 (COVID-19), caused by SARS-CoV-2, is spreading rapidly across the world and was announced as a “global pandemic” by the World Health Organization (WHO) o...
      Speaker: Quan Wang, PhD , Renhong Yan, PhD
      Presented at: Microbiology Week Virtual Event Series 2020
      Sponsored By: Thermo Fisher Scientific
      2
    MAY 27, 2021 | 11:00 AM
    Planning to Succeed - How and where standardization can improve your microbiome studies
    Planning to Succeed - How and where standardization can improve...
    Date: May 27, 2021 Time: 11:00am PDT, 2:00pm EDT Microbiome studies often suffer from issues that recent technological advances can solve easily. In this seminar, we will walk through planni...
    Speaker: Dr. Julia Cope, PhD.
    Sponsored By: Mawi DNA Technologies
    7 3
    MAY 18, 2021 | 8:00 AM
    Avoiding hurdles in molecular assay development
    Avoiding hurdles in molecular assay development
    Date: May 18, 2021 Time: 8:00am (PST) The global pandemic has caused an increased focus and scrutiny on molecular diagnostic assay development, resulting in a need for assays that provide qu...
    Speaker: Naeem Nathoo
    Sponsored By: Thermo Fisher Scientific
    7 2
    MAY 11, 2021 | 10:00 AM
    Secure Your Next Great Discovery
    Secure Your Next Great Discovery
    Date: May 11, 2021 Time: 10:00zm PDT Your samples are some of the most valuable assets in the laboratory. After spending countless hours on extraction and preparation, your conclusions could...
    Speaker: Paulina Kocjan , Kate Meola , Zareh Zurabyan
    Presented at: Eppendorf Planet of Knowledge - A New Dimension
    Sponsored By: Eppendorf
    8
    MAY 05, 2021 | 12:00 AM
    Microbiomes after Death
    Microbiomes after Death
    The postmortem microbiome is an emerging field in forensic science with broad application for death investigation (e.g., time since death). While the foundation for forensic microbiology beg...
    Speaker: Jennifer Pechal, PhD
    Presented at: Forensic Sciences Virtual Event Series 2021
    1
    APR 21, 2021 | 12:00 AM
    Hybrid Capture SARS-CoV-2 NGS Assay and COVID-Dx: a robust end to end solution for viral detection and surveillance of genetic variants
    Hybrid Capture SARS-CoV-2 NGS Assay and COVID-Dx: a robust end...
    As the SARS-CoV-2 continues to spread and evolve and vaccination efforts are under way, countries around the world are confronting new public health challenges due to the emergence and rapid...
    Speaker: Mara Couto-Rodriguez
    Presented at: Genetics Week Virtual Event Series 2021
    1
     
     
  • APR 20, 2021 | 6:00 AM
    Panel Presentation: Accelerating SARS-CoV-2 genomic surveillance with a new high-throughput NGS solution
    Panel Presentation: Accelerating SARS-CoV-2 genomic surveillance...
    Since late 2020, several prominent SARS-CoV-2 variants of concern have emerged harboring specific mutations which increase viral transmissibility (e.g., lineage B.1.1.7), and which appear to...
    Speaker: Brian Dugan, M.S. , Fernando Spikli, PhD
    Presented at: Genetics Week Virtual Event Series 2021
    Sponsored By: QIAGEN
    1
    APR 20, 2021 | 12:00 AM
    C.E. CREDITS
    Low error rate long-reads enable the identification of long variant haplotypes in metagenome assemblies
    Low error rate long-reads enable the identification of long variant...
    Microbial communities include distinct lineages of closely related organisms which have proved challenging to separate in metagenomic assembly. Challenges include the existence of highly rel...
    Speaker: Derek Bickhart, PhD
    Presented at: Genetics Week Virtual Event Series 2021
    2
    FEB 24, 2021 | 10:00 AM
    Biosafety Enclosures and the Automated Lab: Steps for Success
    Biosafety Enclosures and the Automated Lab: Steps for Success
    DATE: February 24, 2021 TIME: 10am PST Automated lab instruments such as liquid handlers and cell sorters are increasingly common in all types of laboratories, driving fast results for labor...
    Speaker: David Wasescha , Simon Fogarty
    Sponsored By: Labconco
    15
    DEC 15, 2020 | 10:00 AM
    Prep for Success: From human microbiome exploration to advanced SARS-CoV-2 testing in wastewater
    Prep for Success: From human microbiome exploration to advanced...
    DATE: December 15, 2020 TIME: 10:00am PST Scientists from Thermo Fisher Scientific will walk us through the world of microorganisms. They will discuss their most recent research on viruses,...
    Speaker: Sasha Vlassov, PhD , Jasti Madhu , Emily Zeringer
    Sponsored By: Thermo Fisher Scientific
    13
    DEC 03, 2020 | 4:30 PM
    An Iterative Approach to Structure-based in silico to in vivo Development of Combinatorial Anti-SARS-CoV-2 Therapy
    An Iterative Approach to Structure-based in silico to in vivo...
    This drug development program is designed to create a family of broad-spectrum, pan-coronaviral drugs that respectively inhibit multiple key enzymes required for viral replication. By target...
    Speaker: Garth Ehrlich, PhD, FAAAS
    Presented at: Coronavirus Series
    5
     
     
  • DEC 03, 2020 | 12:00 AM
    Recent insights into SARS-CoV-2 intra-host population dynamics
    Recent insights into SARS-CoV-2 intra-host population dynamics
    The fast spread and deadliness of SARS-CoV-2 has sparked much interest in understanding the underlying genomics and evolutionary patterns of this 30,000bp Coronavirus. Since the first report...
    Speaker: Todd Treangen, PhD
    Presented at: Coronavirus Series
    3 1
    DEC 02, 2020 | 8:00 AM
    Optimize your bioprocess - From shaker to bioreactor
    Optimize your bioprocess - From shaker to bioreactor
    DATE: December 2nd, 2020 TIME: 08:00am PDT, 11:00pm EDT Bioreactors and shakers are used to cultivate microorganisms, plant, insect, and mammalian cells in different volumes. Upscaling of pr...
    Speaker: Ines Hartmann , David Solbach
    Sponsored By: Eppendorf
    11
    OCT 09, 2020 | 8:00 AM
    The Expanding Role of Diagnostic Next Generation Sequencing (NGS) in the Clinical Microbiology Laboratory
    The Expanding Role of Diagnostic Next Generation Sequencing (NGS)...
    DATE: October 09, 2020 TIME: 08:00am PT Traditional culture techniques, as the primary diagnostic tool for infectious diseases, are coming under scrutiny for failing to universally detect in...
    Speaker: Joseph John, Jr., MD, FIDSA , Michael Schmidt, Ph.D. FAAM, FACD
    Sponsored By: MicroGenDX
    16
    SEP 23, 2020 | 10:30 AM
    iPSC- and patient- derived intestinal organoids for gastrointestinal research
    iPSC- and patient- derived intestinal organoids for gastrointestinal...
    Intestinal organoids are self-organizing, 3D structures derived from either pluripotent stem cells or from primary tissues with the abiltiy to recapitulate some of the spatial architecture a...
    Speaker: Kevin Su
    Presented at: Cell Biology Virtual Event Series 2020
    Sponsored By: MilliporeSigma
    2
    SEP 17, 2020 | 12:00 AM
    The detection, characterization, and surveillance of the SARS-CoV-2 viral genome using hybridization capture-based NGS assay
    The detection, characterization, and surveillance of the SARS-CoV-2...
    As the spread of infectious diseases, current pandemic, and growing antimicrobial resistance (AMR) continues globally, next-generation sequencing (NGS) became a tool to diagnose infectious d...
    Speaker: Dorottya Nagy-Szakal, MD PhD
    Presented at: Coronavirus Series
    1
     
     
  • SEP 10, 2020 | 3:00 PM
    Plant Microbiome: Harnessing Core Microbiome for Sustainable Agricultures
    Plant Microbiome: Harnessing Core Microbiome for Sustainable Agricultures
    While global demand for food is expected to increase significantly (70% by 2050), the agricultural industry is suffering from a decline in soil fertility, the adverse effects of climate chan...
    Speaker: Brajesh Singh
    Presented at: Microbiology Week Virtual Event Series 2020
    Sponsored By: QIAGEN
    3
    SEP 10, 2020 | 2:00 PM
    Dynamic live yeast and bacterial cell imaging using CellASIC ONIX2 microfluidic platform
    Dynamic live yeast and bacterial cell imaging using CellASIC ONIX2...
    While live cell imaging offers advantages over traditional static imaging, this approach has been challenging for studying microbes due to the difficulty in tracking very small cells in a si...
    Speaker: Cindy Chen, PhD
    Presented at: Microbiology Week Virtual Event Series 2020
    Sponsored By: MilliporeSigma
    1
    SEP 10, 2020 | 1:00 PM
    Keynote Presentation: Evolution of host-specific virulence in an RNA virus of Pacific salmonid fish
    Keynote Presentation: Evolution of host-specific virulence in...
    In Pacific Northwest watersheds several species of Pacific salmonid fishes are hosts for the rhabdovirus infectious hematopoietic necrosis virus (IHNV). In this multi-host ecosystem speciali...
    Speaker: Gael Kurath, PhD
    Presented at: Microbiology Week Virtual Event Series 2020
    1
    SEP 10, 2020 | 12:00 PM
    Bacterial strain typing and genomics characterization of multi-drug resistance with QIAGEN CLC Genomics Workbench
    Bacterial strain typing and genomics characterization of multi-drug...
    In this webinar, we will present QIAGEN CLC Genomics Workbench and its utility for bacterial isolate identification, strain discrimination using core genome multi-locus typing (cgMLST) and d...
    Speaker: Jonathan Jacobs, PhD
    Presented at: Microbiology Week Virtual Event Series 2020
    Sponsored By: QIAGEN
    2
    SEP 10, 2020 | 11:00 AM
    Optimizing the extraction of human microbiome samples
    Optimizing the extraction of human microbiome samples
    Learning Objectives: 1. Understand the challenges of extracting DNA from human samples for microbiome analysis, and learn about the best technologies for accomplishing this 2. Learn about pr...
    Speaker: Dominic O'Neil, MS, MBA
    Presented at: Microbiology Week Virtual Event Series 2020
    Sponsored By: QIAGEN
    2
     
     
  • SEP 10, 2020 | 10:00 AM
    Keynote Presentation: Squeezing out understanding from sequences: Genome to Phenome Connections in Viruses of Microbes
    Keynote Presentation: Squeezing out understanding from sequences:...
    Enigmatic and often vilified, viruses are now known to play important and possibly indispensable roles in the biology and ecology of cellular organisms. Evidence of viral impacts are everywh...
    Speaker: K. Eric Wommack
    Presented at: Microbiology Week Virtual Event Series 2020
    1
    SEP 10, 2020 | 9:00 AM
    Congenital Cytomegalovirus - An Unrecognized and Preventable Problem: Fundamentals of Prevention, Diagnosis and Management
    Congenital Cytomegalovirus - An Unrecognized and Preventable Problem:...
    Congenital CMV is the most frequent infectious cause of neonatal malformation in developed nations. It is more prevalent than other neonatal conditions such as spina bifida and Down syndrome...
    Speaker: William Rawlinson, PhD
    Presented at: Microbiology Week Virtual Event Series 2020
    Sponsored By: Diasorin
    3
    SEP 10, 2020 | 7:30 AM
    Keynote Presentation: Discovery of a gene-microbiome interaction in lung cancer: lessons learned and future directions
    Keynote Presentation: Discovery of a gene-microbiome interaction...
    The selective pressure placed on the resident microbiota by local changes in the host environment – DNA damage, chronic inflammation, metabolic shifts, barrier damage, reduced immunosu...
    Speaker: K. Leigh Greathouse, PhD, MPH, MS, RD
    Presented at: Microbiology Week Virtual Event Series 2020
    3
    SEP 10, 2020 | 6:00 AM
    Structure-guided design of SARS-CoV-2 antivirals
    Structure-guided design of SARS-CoV-2 antivirals
    Coronavirus disease 2019 (COVID-19), caused by SARS-CoV-2, is spreading rapidly across the world and was announced as a “global pandemic” by the World Health Organization (WHO) o...
    Speaker: Quan Wang, PhD , Renhong Yan, PhD
    Presented at: Microbiology Week Virtual Event Series 2020
    Sponsored By: Thermo Fisher Scientific
    2
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