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    Microbiome and diseases

    The microbiome describes the microbes (such as bacteria, fungi, viruses) that live in and on our bodies. The distribution and presence of microbes can have a significant impact on health and disease. Further, alterations in the microbiome can impact how a patient will respond to treatments prescribed for diseases.

    Webinars

    • SEP 09, 2021 | 12:00 AM
      Development of Capture Sequencing Assays for Enhanced Detection and Genotyping of Tick-borne Pathogens and Infectious Vertebrate Viruses
      Development of Capture Sequencing Assays for Enhanced Detection...
      Early detection is critical for prompt and effective treatment of acute infectious diseases. For tick-borne diseases (TBD), the lack of accurate early diagnosis can result in delayed treatme...
      Speaker: Komal Jain, M.Sc., MS
      Presented at: Microbiology Week Virtual Event Series 2021
      1
      SEP 09, 2021 | 12:00 AM
      Log-linear Model for Modeling for Biases in Microbiome Studies
      Log-linear Model for Modeling for Biases in Microbiome Studies
      Microbiome sequencing data are known to be biased; the measured taxa relative abundances can be systematically distorted from their true values at every step in the experimental/analysis wor...
      Speaker: Ni Zhao, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      2
      SEP 08, 2021 | 10:30 AM
      A CRISPR-Powered Universal Infectious Disease Assay
      A CRISPR-Powered Universal Infectious Disease Assay
      Varicella zoster virus (VZV) causes two clinically distinct forms of disease, varicella and herpes zoster. These forms can each present with multiple manifestations ranging from lesions incl...
      Speaker: Jon Armstrong, MSc
      Presented at: Microbiology Week Virtual Event Series 2021
      Sponsored By: Jumpcode Genomics
      0
      SEP 08, 2021 | 7:30 AM
      Keynote Presentation: Viromics: Lessons from the Oceans, Soils, and Humans
      Keynote Presentation: Viromics: Lessons from the Oceans, Soils,...
      Microbes are recently recognized as driving the energy and nutrient transformations that fuel Earth’s ecosystems in soils, oceans and humans. Where studied, viruses appear to modulate...
      Speaker: Matthew Sullivan, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      1
      SEP 08, 2021 | 12:00 AM
      Gut Microbiota in maternal-infant populations with HIV
      Gut Microbiota in maternal-infant populations with HIV
      The gut microbiota has been proposed to affect the risk and prognosis of various health outcomes. Related to pregnancy, existing studies suggest that pregnant women have a distinct microbiot...
      Speaker: Rupak Shivakoti, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      0
      SEP 08, 2021 | 12:00 AM
      Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty to Pharmaceutical and Clinical Application(s)
      Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty...
      The Human Microbiome Project was conceived almost 15 years ago, as an extension of the Human Genome Project, to explore the diversity of human-associated microorganisms at multiple body site...
      Speaker: Ramy K. Aziz, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      1
      JUL 15, 2021 | 9:00 AM
      Veranome Webinar Series:  Highly Multiplexed Analysis of Mouse Neural Tissues
      Veranome Webinar Series: Highly Multiplexed Analysis of Mouse...
      Date: July 15, 2021 Time: 9:00am (PDT), 12:00pm (EDT) The Pisces workflow robust, easy-to-use, end-to-end multi-omics solution for highly multiplexed targeted Spatial RNA analysis. VeranomeB...
      Speaker: Brian Hilbush, Ph.D.
      Sponsored By: Veranome Biosystems
      9
      JUN 22, 2021 | 10:00 AM
      Can AI powered diagnostics revolutionize antimicrobial stewardship? Machine learning based prediction of antimicrobial resistance (AMR) in short and long read sequencing data
      Can AI powered diagnostics revolutionize antimicrobial stewardship?...
      Date: June 22, 2021 Time: 10:00am (PDT), 1:00pm (EDT) Antimicrobial resistance (AMR) has emerged as one of the principal public health problems of the 21st century. It threatens the effectiv...
      Speaker: Dr. Arne Materna
      Sponsored By: OpGen, Inc.
      7
      JUN 08, 2021 | 9:00 AM
      Innovations in Vaccine Research and Development
      Innovations in Vaccine Research and Development
      Date: June 8, 2021 Time: 9:00am PDT Reducing the spread of highly infectious and deadly diseases within the population, vaccine development is crucial in saving millions of lives each year....
      Speaker: Laura Chapman , Ketil Pedersen, Ph.D , Alexander "Sasha" Vlassov , Matt Mckenna
      Sponsored By: Thermo Fisher Scientific
      28 4
      MAY 18, 2021 | 8:00 AM
      Avoiding hurdles in molecular assay development
      Avoiding hurdles in molecular assay development
      Date: May 18, 2021 Time: 8:00am (PST) The global pandemic has caused an increased focus and scrutiny on molecular diagnostic assay development, resulting in a need for assays that provide qu...
      Speaker: Naeem Nathoo
      Sponsored By: Thermo Fisher Scientific
      7 2
      APR 21, 2021 | 12:00 AM
      Hybrid Capture SARS-CoV-2 NGS Assay and COVID-Dx: a robust end to end solution for viral detection and surveillance of genetic variants
      Hybrid Capture SARS-CoV-2 NGS Assay and COVID-Dx: a robust end...
      As the SARS-CoV-2 continues to spread and evolve and vaccination efforts are under way, countries around the world are confronting new public health challenges due to the emergence and rapid...
      Speaker: Mara Couto-Rodriguez
      Presented at: Genetics Week Virtual Event Series 2021
      1
      APR 20, 2021 | 6:00 AM
      Panel Presentation: Accelerating SARS-CoV-2 genomic surveillance with a new high-throughput NGS solution
      Panel Presentation: Accelerating SARS-CoV-2 genomic surveillance...
      Since late 2020, several prominent SARS-CoV-2 variants of concern have emerged harboring specific mutations which increase viral transmissibility (e.g., lineage B.1.1.7), and which appear to...
      Speaker: Brian Dugan, M.S. , Fernando Spikli, PhD
      Presented at: Genetics Week Virtual Event Series 2021
      Sponsored By: QIAGEN
      1
      DEC 15, 2020 | 10:00 AM
      Prep for Success: From human microbiome exploration to advanced SARS-CoV-2 testing in wastewater
      Prep for Success: From human microbiome exploration to advanced...
      DATE: December 15, 2020 TIME: 10:00am PST Scientists from Thermo Fisher Scientific will walk us through the world of microorganisms. They will discuss their most recent research on viruses,...
      Speaker: Sasha Vlassov, PhD , Jasti Madhu , Emily Zeringer
      Sponsored By: Thermo Fisher Scientific
      13
      DEC 03, 2020 | 4:30 PM
      An Iterative Approach to Structure-based in silico to in vivo Development of Combinatorial Anti-SARS-CoV-2 Therapy
      An Iterative Approach to Structure-based in silico to in vivo...
      This drug development program is designed to create a family of broad-spectrum, pan-coronaviral drugs that respectively inhibit multiple key enzymes required for viral replication. By target...
      Speaker: Garth Ehrlich, PhD, FAAAS
      Presented at: Coronavirus Series
      5
      DEC 03, 2020 | 12:00 AM
      Recent insights into SARS-CoV-2 intra-host population dynamics
      Recent insights into SARS-CoV-2 intra-host population dynamics
      The fast spread and deadliness of SARS-CoV-2 has sparked much interest in understanding the underlying genomics and evolutionary patterns of this 30,000bp Coronavirus. Since the first report...
      Speaker: Todd Treangen, PhD
      Presented at: Coronavirus Series
      3 1
      DEC 02, 2020 | 8:00 AM
      Optimize your bioprocess - From shaker to bioreactor
      Optimize your bioprocess - From shaker to bioreactor
      DATE: December 2nd, 2020 TIME: 08:00am PDT, 11:00pm EDT Bioreactors and shakers are used to cultivate microorganisms, plant, insect, and mammalian cells in different volumes. Upscaling of pr...
      Speaker: Ines Hartmann , David Solbach
      Sponsored By: Eppendorf
      11
      OCT 09, 2020 | 8:00 AM
      The Expanding Role of Diagnostic Next Generation Sequencing (NGS) in the Clinical Microbiology Laboratory
      The Expanding Role of Diagnostic Next Generation Sequencing (NGS)...
      DATE: October 09, 2020 TIME: 08:00am PT Traditional culture techniques, as the primary diagnostic tool for infectious diseases, are coming under scrutiny for failing to universally detect in...
      Speaker: Joseph John, Jr., MD, FIDSA , Michael Schmidt, Ph.D. FAAM, FACD
      Sponsored By: MicroGenDX
      16
      SEP 23, 2020 | 10:30 AM
      iPSC- and patient- derived intestinal organoids for gastrointestinal research
      iPSC- and patient- derived intestinal organoids for gastrointestinal...
      Intestinal organoids are self-organizing, 3D structures derived from either pluripotent stem cells or from primary tissues with the abiltiy to recapitulate some of the spatial architecture a...
      Speaker: Kevin Su
      Presented at: Cell Biology Virtual Event Series 2020
      Sponsored By: MilliporeSigma
      2
      SEP 17, 2020 | 12:00 AM
      The detection, characterization, and surveillance of the SARS-CoV-2 viral genome using hybridization capture-based NGS assay
      The detection, characterization, and surveillance of the SARS-CoV-2...
      As the spread of infectious diseases, current pandemic, and growing antimicrobial resistance (AMR) continues globally, next-generation sequencing (NGS) became a tool to diagnose infectious d...
      Speaker: Dorottya Nagy-Szakal, MD PhD
      Presented at: Coronavirus Series
      1
      SEP 10, 2020 | 3:00 PM
      Plant Microbiome: Harnessing Core Microbiome for Sustainable Agricultures
      Plant Microbiome: Harnessing Core Microbiome for Sustainable Agricultures
      While global demand for food is expected to increase significantly (70% by 2050), the agricultural industry is suffering from a decline in soil fertility, the adverse effects of climate chan...
      Speaker: Brajesh Singh
      Presented at: Microbiology Week Virtual Event Series 2020
      Sponsored By: QIAGEN
      3
      SEP 10, 2020 | 2:00 PM
      Dynamic live yeast and bacterial cell imaging using CellASIC ONIX2 microfluidic platform
      Dynamic live yeast and bacterial cell imaging using CellASIC ONIX2...
      While live cell imaging offers advantages over traditional static imaging, this approach has been challenging for studying microbes due to the difficulty in tracking very small cells in a si...
      Speaker: Cindy Chen, PhD
      Presented at: Microbiology Week Virtual Event Series 2020
      Sponsored By: MilliporeSigma
      1
      SEP 10, 2020 | 1:00 PM
      Keynote Presentation: Evolution of host-specific virulence in an RNA virus of Pacific salmonid fish
      Keynote Presentation: Evolution of host-specific virulence in...
      In Pacific Northwest watersheds several species of Pacific salmonid fishes are hosts for the rhabdovirus infectious hematopoietic necrosis virus (IHNV). In this multi-host ecosystem speciali...
      Speaker: Gael Kurath, PhD
      Presented at: Microbiology Week Virtual Event Series 2020
      1
      SEP 10, 2020 | 12:00 PM
      Bacterial strain typing and genomics characterization of multi-drug resistance with QIAGEN CLC Genomics Workbench
      Bacterial strain typing and genomics characterization of multi-drug...
      In this webinar, we will present QIAGEN CLC Genomics Workbench and its utility for bacterial isolate identification, strain discrimination using core genome multi-locus typing (cgMLST) and d...
      Speaker: Jonathan Jacobs, PhD
      Presented at: Microbiology Week Virtual Event Series 2020
      Sponsored By: QIAGEN
      2
      SEP 10, 2020 | 11:00 AM
      Optimizing the extraction of human microbiome samples
      Optimizing the extraction of human microbiome samples
      Learning Objectives: 1. Understand the challenges of extracting DNA from human samples for microbiome analysis, and learn about the best technologies for accomplishing this 2. Learn about pr...
      Speaker: Dominic O'Neil, MS, MBA
      Presented at: Microbiology Week Virtual Event Series 2020
      Sponsored By: QIAGEN
      2
    SEP 09, 2021 | 12:00 AM
    Development of Capture Sequencing Assays for Enhanced Detection and Genotyping of Tick-borne Pathogens and Infectious Vertebrate Viruses
    Development of Capture Sequencing Assays for Enhanced Detection...
    Early detection is critical for prompt and effective treatment of acute infectious diseases. For tick-borne diseases (TBD), the lack of accurate early diagnosis can result in delayed treatme...
    Speaker: Komal Jain, M.Sc., MS
    Presented at: Microbiology Week Virtual Event Series 2021
    1
    SEP 09, 2021 | 12:00 AM
    Log-linear Model for Modeling for Biases in Microbiome Studies
    Log-linear Model for Modeling for Biases in Microbiome Studies
    Microbiome sequencing data are known to be biased; the measured taxa relative abundances can be systematically distorted from their true values at every step in the experimental/analysis wor...
    Speaker: Ni Zhao, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    2
    SEP 08, 2021 | 10:30 AM
    A CRISPR-Powered Universal Infectious Disease Assay
    A CRISPR-Powered Universal Infectious Disease Assay
    Varicella zoster virus (VZV) causes two clinically distinct forms of disease, varicella and herpes zoster. These forms can each present with multiple manifestations ranging from lesions incl...
    Speaker: Jon Armstrong, MSc
    Presented at: Microbiology Week Virtual Event Series 2021
    Sponsored By: Jumpcode Genomics
    0
    SEP 08, 2021 | 7:30 AM
    Keynote Presentation: Viromics: Lessons from the Oceans, Soils, and Humans
    Keynote Presentation: Viromics: Lessons from the Oceans, Soils,...
    Microbes are recently recognized as driving the energy and nutrient transformations that fuel Earth’s ecosystems in soils, oceans and humans. Where studied, viruses appear to modulate...
    Speaker: Matthew Sullivan, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    1
    SEP 08, 2021 | 12:00 AM
    Gut Microbiota in maternal-infant populations with HIV
    Gut Microbiota in maternal-infant populations with HIV
    The gut microbiota has been proposed to affect the risk and prognosis of various health outcomes. Related to pregnancy, existing studies suggest that pregnant women have a distinct microbiot...
    Speaker: Rupak Shivakoti, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    0
     
     
  • SEP 08, 2021 | 12:00 AM
    Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty to Pharmaceutical and Clinical Application(s)
    Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty...
    The Human Microbiome Project was conceived almost 15 years ago, as an extension of the Human Genome Project, to explore the diversity of human-associated microorganisms at multiple body site...
    Speaker: Ramy K. Aziz, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    1
    JUL 15, 2021 | 9:00 AM
    Veranome Webinar Series:  Highly Multiplexed Analysis of Mouse Neural Tissues
    Veranome Webinar Series: Highly Multiplexed Analysis of Mouse...
    Date: July 15, 2021 Time: 9:00am (PDT), 12:00pm (EDT) The Pisces workflow robust, easy-to-use, end-to-end multi-omics solution for highly multiplexed targeted Spatial RNA analysis. VeranomeB...
    Speaker: Brian Hilbush, Ph.D.
    Sponsored By: Veranome Biosystems
    9
    JUN 22, 2021 | 10:00 AM
    Can AI powered diagnostics revolutionize antimicrobial stewardship? Machine learning based prediction of antimicrobial resistance (AMR) in short and long read sequencing data
    Can AI powered diagnostics revolutionize antimicrobial stewardship?...
    Date: June 22, 2021 Time: 10:00am (PDT), 1:00pm (EDT) Antimicrobial resistance (AMR) has emerged as one of the principal public health problems of the 21st century. It threatens the effectiv...
    Speaker: Dr. Arne Materna
    Sponsored By: OpGen, Inc.
    7
    JUN 08, 2021 | 9:00 AM
    Innovations in Vaccine Research and Development
    Innovations in Vaccine Research and Development
    Date: June 8, 2021 Time: 9:00am PDT Reducing the spread of highly infectious and deadly diseases within the population, vaccine development is crucial in saving millions of lives each year....
    Speaker: Laura Chapman , Ketil Pedersen, Ph.D , Alexander "Sasha" Vlassov , Matt Mckenna
    Sponsored By: Thermo Fisher Scientific
    28 4
    MAY 18, 2021 | 8:00 AM
    Avoiding hurdles in molecular assay development
    Avoiding hurdles in molecular assay development
    Date: May 18, 2021 Time: 8:00am (PST) The global pandemic has caused an increased focus and scrutiny on molecular diagnostic assay development, resulting in a need for assays that provide qu...
    Speaker: Naeem Nathoo
    Sponsored By: Thermo Fisher Scientific
    7 2
     
     
  • APR 21, 2021 | 12:00 AM
    Hybrid Capture SARS-CoV-2 NGS Assay and COVID-Dx: a robust end to end solution for viral detection and surveillance of genetic variants
    Hybrid Capture SARS-CoV-2 NGS Assay and COVID-Dx: a robust end...
    As the SARS-CoV-2 continues to spread and evolve and vaccination efforts are under way, countries around the world are confronting new public health challenges due to the emergence and rapid...
    Speaker: Mara Couto-Rodriguez
    Presented at: Genetics Week Virtual Event Series 2021
    1
    APR 20, 2021 | 6:00 AM
    Panel Presentation: Accelerating SARS-CoV-2 genomic surveillance with a new high-throughput NGS solution
    Panel Presentation: Accelerating SARS-CoV-2 genomic surveillance...
    Since late 2020, several prominent SARS-CoV-2 variants of concern have emerged harboring specific mutations which increase viral transmissibility (e.g., lineage B.1.1.7), and which appear to...
    Speaker: Brian Dugan, M.S. , Fernando Spikli, PhD
    Presented at: Genetics Week Virtual Event Series 2021
    Sponsored By: QIAGEN
    1
    DEC 15, 2020 | 10:00 AM
    Prep for Success: From human microbiome exploration to advanced SARS-CoV-2 testing in wastewater
    Prep for Success: From human microbiome exploration to advanced...
    DATE: December 15, 2020 TIME: 10:00am PST Scientists from Thermo Fisher Scientific will walk us through the world of microorganisms. They will discuss their most recent research on viruses,...
    Speaker: Sasha Vlassov, PhD , Jasti Madhu , Emily Zeringer
    Sponsored By: Thermo Fisher Scientific
    13
    DEC 03, 2020 | 4:30 PM
    An Iterative Approach to Structure-based in silico to in vivo Development of Combinatorial Anti-SARS-CoV-2 Therapy
    An Iterative Approach to Structure-based in silico to in vivo...
    This drug development program is designed to create a family of broad-spectrum, pan-coronaviral drugs that respectively inhibit multiple key enzymes required for viral replication. By target...
    Speaker: Garth Ehrlich, PhD, FAAAS
    Presented at: Coronavirus Series
    5
    DEC 03, 2020 | 12:00 AM
    Recent insights into SARS-CoV-2 intra-host population dynamics
    Recent insights into SARS-CoV-2 intra-host population dynamics
    The fast spread and deadliness of SARS-CoV-2 has sparked much interest in understanding the underlying genomics and evolutionary patterns of this 30,000bp Coronavirus. Since the first report...
    Speaker: Todd Treangen, PhD
    Presented at: Coronavirus Series
    3 1
     
     
  • DEC 02, 2020 | 8:00 AM
    Optimize your bioprocess - From shaker to bioreactor
    Optimize your bioprocess - From shaker to bioreactor
    DATE: December 2nd, 2020 TIME: 08:00am PDT, 11:00pm EDT Bioreactors and shakers are used to cultivate microorganisms, plant, insect, and mammalian cells in different volumes. Upscaling of pr...
    Speaker: Ines Hartmann , David Solbach
    Sponsored By: Eppendorf
    11
    OCT 09, 2020 | 8:00 AM
    The Expanding Role of Diagnostic Next Generation Sequencing (NGS) in the Clinical Microbiology Laboratory
    The Expanding Role of Diagnostic Next Generation Sequencing (NGS)...
    DATE: October 09, 2020 TIME: 08:00am PT Traditional culture techniques, as the primary diagnostic tool for infectious diseases, are coming under scrutiny for failing to universally detect in...
    Speaker: Joseph John, Jr., MD, FIDSA , Michael Schmidt, Ph.D. FAAM, FACD
    Sponsored By: MicroGenDX
    16
    SEP 23, 2020 | 10:30 AM
    iPSC- and patient- derived intestinal organoids for gastrointestinal research
    iPSC- and patient- derived intestinal organoids for gastrointestinal...
    Intestinal organoids are self-organizing, 3D structures derived from either pluripotent stem cells or from primary tissues with the abiltiy to recapitulate some of the spatial architecture a...
    Speaker: Kevin Su
    Presented at: Cell Biology Virtual Event Series 2020
    Sponsored By: MilliporeSigma
    2
    SEP 17, 2020 | 12:00 AM
    The detection, characterization, and surveillance of the SARS-CoV-2 viral genome using hybridization capture-based NGS assay
    The detection, characterization, and surveillance of the SARS-CoV-2...
    As the spread of infectious diseases, current pandemic, and growing antimicrobial resistance (AMR) continues globally, next-generation sequencing (NGS) became a tool to diagnose infectious d...
    Speaker: Dorottya Nagy-Szakal, MD PhD
    Presented at: Coronavirus Series
    1
    SEP 10, 2020 | 3:00 PM
    Plant Microbiome: Harnessing Core Microbiome for Sustainable Agricultures
    Plant Microbiome: Harnessing Core Microbiome for Sustainable Agricultures
    While global demand for food is expected to increase significantly (70% by 2050), the agricultural industry is suffering from a decline in soil fertility, the adverse effects of climate chan...
    Speaker: Brajesh Singh
    Presented at: Microbiology Week Virtual Event Series 2020
    Sponsored By: QIAGEN
    3
     
     
  • SEP 10, 2020 | 2:00 PM
    Dynamic live yeast and bacterial cell imaging using CellASIC ONIX2 microfluidic platform
    Dynamic live yeast and bacterial cell imaging using CellASIC ONIX2...
    While live cell imaging offers advantages over traditional static imaging, this approach has been challenging for studying microbes due to the difficulty in tracking very small cells in a si...
    Speaker: Cindy Chen, PhD
    Presented at: Microbiology Week Virtual Event Series 2020
    Sponsored By: MilliporeSigma
    1
    SEP 10, 2020 | 1:00 PM
    Keynote Presentation: Evolution of host-specific virulence in an RNA virus of Pacific salmonid fish
    Keynote Presentation: Evolution of host-specific virulence in...
    In Pacific Northwest watersheds several species of Pacific salmonid fishes are hosts for the rhabdovirus infectious hematopoietic necrosis virus (IHNV). In this multi-host ecosystem speciali...
    Speaker: Gael Kurath, PhD
    Presented at: Microbiology Week Virtual Event Series 2020
    1
    SEP 10, 2020 | 12:00 PM
    Bacterial strain typing and genomics characterization of multi-drug resistance with QIAGEN CLC Genomics Workbench
    Bacterial strain typing and genomics characterization of multi-drug...
    In this webinar, we will present QIAGEN CLC Genomics Workbench and its utility for bacterial isolate identification, strain discrimination using core genome multi-locus typing (cgMLST) and d...
    Speaker: Jonathan Jacobs, PhD
    Presented at: Microbiology Week Virtual Event Series 2020
    Sponsored By: QIAGEN
    2
    SEP 10, 2020 | 11:00 AM
    Optimizing the extraction of human microbiome samples
    Optimizing the extraction of human microbiome samples
    Learning Objectives: 1. Understand the challenges of extracting DNA from human samples for microbiome analysis, and learn about the best technologies for accomplishing this 2. Learn about pr...
    Speaker: Dominic O'Neil, MS, MBA
    Presented at: Microbiology Week Virtual Event Series 2020
    Sponsored By: QIAGEN
    2
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