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    Metagenomics

    Metagenomics is the holistic analysis of the genomes of organisms within an environmentally-obtained sample.

    Webinars

    • SEP 27, 2023 | 9:00 AM
      NextSeqâ„¢ 1000/2000: Longer reads and extended informatics
      NextSeqâ„¢ 1000/2000: Longer reads and extended informatics
      Join our webinar where we will highlight key NextSeq™ 1000 and 2000 product updates and features of the on-board DRAGEN Bio-IT platform. We will cover the basics of how the flexibility...
      Speaker: Sam Hester , Deepthi Shankar
      Sponsored By: Illumina
      9
      JUL 26, 2023 | 4:05 PM
      Discovery and engineering of a miniature CRISPR-Cas type V-L system
      Discovery and engineering of a miniature CRISPR-Cas type V-L system
      Employing a metagenomic search, we identified a family of miniature CRISPR-Cas type V-L systems capable of RNA-guided dsDNA target cleavage without a tracrRNA. A bacterial depletion screen r...
      Speaker: Lauren Alfonse
      Presented at: GenScript 3rd Annual Gene and Cell Engineering Summit
      6
      MAY 31, 2023 | 6:00 AM
      Applications of Metagenomic NGS in Immunodeficient Patients
      Applications of Metagenomic NGS in Immunodeficient Patients
      Although metagenomic next-generation sequencing (mNGS) is increasingly used in clinical microbiological diagnosis, especially for rare or complicated infectious diseases, the applications of...
      Speaker: Lili Gao, MD , Tao Chen, MD, PhD
      Sponsored By: BGI Americas
      18
      MAY 18, 2023 | 9:00 AM
      AGBT 2023 Recorded Spotlight Talk: NextSeq 1000 and 2000 Product updates and key applications
      AGBT 2023 Recorded Spotlight Talk: NextSeq 1000 and 2000 Product...
      Date: May 18, 2023 Time: 9:00am (PDT), 12:00pm (EDT), 6:00pm (CEST)...
      Speaker: Sam Hester
      Sponsored By: Illumina
      6
      APR 06, 2023 | 10:00 AM
      Don't fear the robot: Lab automation for high-throughput discovery science
      Don't fear the robot: Lab automation for high-throughput discovery...
      Date: April 06, 2023 Time: 10:00am (PDT), 1:00pm (EDT), 7:00pm (CEST) Join this webinar to learn how Carlos Goller has designed undergraduate and graduate courses to teach high-throughput di...
      Speaker: Carlos Goller
      Sponsored By: Opentrons
      17
      MAR 08, 2023 | 9:00 AM
      Boost microbial detection sensitivity with unbiased human host DNA and RNA depletion
      Boost microbial detection sensitivity with unbiased human host...
      Date: March 08, 2023 Time: 9:00am (PST), 12:00pm (EST), 6:00pm (CET) An unbiased characterization of the human microbiome is crucial to a more complete understanding of microbial effect on h...
      Speaker: Zenas George, Ph.D.
      Sponsored By: Jumpcode Genomics
      8
      NOV 15, 2022 | 8:00 AM
      Beyond SARS-CoV-2, application of Absolute Q digital PCR system for waterborne pathogens
      Beyond SARS-CoV-2, application of Absolute Q digital PCR system...
      Date: November 15, 2022 Time: 8:00am (PST), 11:00am (EST), 5:00pm (CET) Waterborne pathogens lead to deteriorating water quality and challenge global health and economy. The latest U.S. Envi...
      Speaker: Huiyun Wu
      Sponsored By: Thermo Fisher Scientific
      16
      SEP 07, 2022 | 12:00 PM
      A Universal "Day Zero" Infectious Disease Testing Strategy Exploiting CRISPR-based Sample Depletion and Metagenomic Sequencing with Live Q&A
      A Universal "Day Zero" Infectious Disease Testing Strategy Exploiting...
      The lack of preparedness for detecting the highly infectious SARS-CoV-2 pathogen, the pathogen responsible for the COVID-19 disease, has caused enormous harm to public health and the economy...
      Speaker: Jon Armstrong, MSc
      Presented at: Microbiology Week Virtual Event Series 2022
      Sponsored By: Jumpcode Genomics
      5
      APR 19, 2022 | 5:30 AM
      C.E. CREDITS
      Rescuing Low Frequency Variants Within Intra-Host Viral Populations Directly from Oxford Nanopore Sequencing Data
      Rescuing Low Frequency Variants Within Intra-Host Viral Populations...
      Infectious disease monitoring on Oxford Nanopore Technologies (ONT) platforms offers rapid turnaround times and low cost. Tracking low frequency intra-host variants provides important insigh...
      Speaker: Yunxi Liu
      Presented at: Genetics Week Virtual Event Series 2022
      2
      OCT 27, 2021 | 10:00 AM
      A CRISPR powered NGS library prep to improve viral, bacterial and host transcript detection in shotgun metagenomic sequencing
      A CRISPR powered NGS library prep to improve viral, bacterial...
      Date: October 27, 2021 Time: 10:00am (PDT), 1:00pm (EDT) The COVID-19 pandemic has brought global awareness to the dangers of emerging pathogens to human health and welfare. Common molecular...
      Speaker: Jon Armstrong, MSc
      Sponsored By: Jumpcode Genomics
      6 2
      OCT 13, 2021 | 4:30 PM
      Delivering Insights by Analyzing Metagenomic NGS Data
      Delivering Insights by Analyzing Metagenomic NGS Data
      In this session we will use a set of reads enriched for viral sequences and sequences from wastewater treatment plants. Specifically the aim is to assemble whole SARS-CoV-2 genomes from such...
      Speaker: Patrick Ettenhuber, PhD
      Presented at: Coronavirus Series
      Sponsored By: QIAGEN
      1
      SEP 08, 2021 | 12:00 AM
      Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty to Pharmaceutical and Clinical Application(s)
      Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty...
      The Human Microbiome Project was conceived almost 15 years ago, as an extension of the Human Genome Project, to explore the diversity of human-associated microorganisms at multiple body site...
      Speaker: Ramy K. Aziz, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      1
      MAY 27, 2021 | 11:00 AM
      Planning to Succeed - How and where standardization can improve your microbiome studies
      Planning to Succeed - How and where standardization can improve...
      Date: May 27, 2021 Time: 11:00am PDT, 2:00pm EDT Microbiome studies often suffer from issues that recent technological advances can solve easily. In this seminar, we will walk through planni...
      Speaker: Dr. Julia Cope, PhD.
      Sponsored By: Mawi DNA Technologies
      7 3
      APR 21, 2021 | 7:30 AM
      Panel Presentation: Next-Generation Sequencing in the Global Response to the COVID-19 Pandemic
      Panel Presentation: Next-Generation Sequencing in the Global Response...
      The SARS-CoV-2 pandemic is challenging our health care systems and has profoundly impacted our society. Due to the poor global public health response, SARS-CoV-2 has developed many variants....
      Speaker: Eric Allen, MBA, M. Eng. Bioengineering , Michael Oberholzer, PhD
      Presented at: Genetics Week Virtual Event Series 2021
      2
      APR 20, 2021 | 4:30 PM
      C.E. CREDITS
      High-throughput clinical and environmental viral extraction and sequencing
      High-throughput clinical and environmental viral extraction and...
      COVID-19 is a severe disease that has caused >1 million deaths in under one year. As this disease is novel, the molecular and cellular underpinnings of the progressive tissue injury are p...
      Speaker: Christopher Mason, Ph.D
      Presented at: Genetics Week Virtual Event Series 2021
      Sponsored By: Tecan
      2
      APR 20, 2021 | 12:00 AM
      C.E. CREDITS
      Low error rate long-reads enable the identification of long variant haplotypes in metagenome assemblies
      Low error rate long-reads enable the identification of long variant...
      Microbial communities include distinct lineages of closely related organisms which have proved challenging to separate in metagenomic assembly. Challenges include the existence of highly rel...
      Speaker: Derek Bickhart, PhD
      Presented at: Genetics Week Virtual Event Series 2021
      2
      SEP 17, 2020 | 11:00 AM
      Host and Viral Transcriptomes During COVID-19 Infection
      Host and Viral Transcriptomes During COVID-19 Infection
      In less than nine months, the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has killed hundreds of thousands of people, including >23,000 in New York City (NYC) alone. The...
      Speaker: Christopher E. Mason, PhD
      Presented at: Coronavirus Series
      3
      SEP 17, 2020 | 12:00 AM
      The detection, characterization, and surveillance of the SARS-CoV-2 viral genome using hybridization capture-based NGS assay
      The detection, characterization, and surveillance of the SARS-CoV-2...
      As the spread of infectious diseases, current pandemic, and growing antimicrobial resistance (AMR) continues globally, next-generation sequencing (NGS) became a tool to diagnose infectious d...
      Speaker: Dorottya Nagy-Szakal, MD PhD
      Presented at: Coronavirus Series
      1
      SEP 10, 2020 | 10:00 AM
      Keynote Presentation: Squeezing out understanding from sequences: Genome to Phenome Connections in Viruses of Microbes
      Keynote Presentation: Squeezing out understanding from sequences:...
      Enigmatic and often vilified, viruses are now known to play important and possibly indispensable roles in the biology and ecology of cellular organisms. Evidence of viral impacts are everywh...
      Speaker: K. Eric Wommack
      Presented at: Microbiology Week Virtual Event Series 2020
      1
      SEP 10, 2020 | 12:00 AM
      Identifying and linking antimicrobial resistance genes in metagenomes with new DNA sequencing technologies
      Identifying and linking antimicrobial resistance genes in metagenomes...
      The transfer of antimicrobial resistance genes (ARG) to pathogenic microbes is a major concern in modern medicine. Antibiotic therapies are often rendered ineffective by horizontal acquisiti...
      Speaker: Derek Bickhart, PhD
      Presented at: Microbiology Week Virtual Event Series 2020
      4
      SEP 10, 2020 | 12:00 AM
      Precision infectious disease discovery using next-generation sequencing and AI to provide insights into respiratory, urine, and stool samples
      Precision infectious disease discovery using next-generation sequencing...
      Lessons around leveraging high-complexity next-generation sequencing tests for precision infectious disease discovery to guide patient treatment and improve health outcomes. Learning Objecti...
      Speaker: Niamh O'Hara, PhD
      Presented at: Microbiology Week Virtual Event Series 2020
      1
      JUL 02, 2020 | 2:00 PM
      Customized Theragen PMRA chip : design history and application examples
      Customized Theragen PMRA chip : design history and application...
      Theragen Bio. (TheragenEtex Subsidiary company) has been conducted the genome-wide research and the genome-based genetic testing services. From 2007, researchers of Theragen Bio. are collabo...
      Speaker: Kyung-Won Hong, PhD
      Presented at: APJ Virtual Genetic Solutions Tour 2020
      1
      JUL 01, 2020 | 12:15 PM
      Ion Torrent NGS-based simple and intuitive solutions for microbiome research
      Ion Torrent NGS-based simple and intuitive solutions for microbiome...
      Here I review the applications of Ion Torrent NGS technology in the field of microbiome research and some recent publications about it. With Ion Torrent 16S rRNA next generation sequencing,...
      Speaker: Keun-Joon Park, PhD
      Presented at: APJ Virtual Genetic Solutions Tour 2020
      2
      JUN 17, 2020 | 1:30 PM
      Insights into the Pathogenesis of COVID-19 as Revealed by Spatial Biology
      Insights into the Pathogenesis of COVID-19 as Revealed by Spatial...
      Understanding the complex interplay between a pathogen and the host response is important to developing effective vaccines and therapeutics. The nCounter® Analysis System and GeoMx®...
      Speaker: Joseph M. Beechem, PhD , Christopher E. Mason, PhD , Robert Schwartz, PhD
      Presented at: Coronavirus Series
      Sponsored By: NanoString Technologies
      9
    SEP 27, 2023 | 9:00 AM
    NextSeqâ„¢ 1000/2000: Longer reads and extended informatics
    NextSeqâ„¢ 1000/2000: Longer reads and extended informatics
    Join our webinar where we will highlight key NextSeq™ 1000 and 2000 product updates and features of the on-board DRAGEN Bio-IT platform. We will cover the basics of how the flexibility...
    Speaker: Sam Hester , Deepthi Shankar
    Sponsored By: Illumina
    9
    JUL 26, 2023 | 4:05 PM
    Discovery and engineering of a miniature CRISPR-Cas type V-L system
    Discovery and engineering of a miniature CRISPR-Cas type V-L system
    Employing a metagenomic search, we identified a family of miniature CRISPR-Cas type V-L systems capable of RNA-guided dsDNA target cleavage without a tracrRNA. A bacterial depletion screen r...
    Speaker: Lauren Alfonse
    Presented at: GenScript 3rd Annual Gene and Cell Engineering Summit
    6
    MAY 31, 2023 | 6:00 AM
    Applications of Metagenomic NGS in Immunodeficient Patients
    Applications of Metagenomic NGS in Immunodeficient Patients
    Although metagenomic next-generation sequencing (mNGS) is increasingly used in clinical microbiological diagnosis, especially for rare or complicated infectious diseases, the applications of...
    Speaker: Lili Gao, MD , Tao Chen, MD, PhD
    Sponsored By: BGI Americas
    18
    MAY 18, 2023 | 9:00 AM
    AGBT 2023 Recorded Spotlight Talk: NextSeq 1000 and 2000 Product updates and key applications
    AGBT 2023 Recorded Spotlight Talk: NextSeq 1000 and 2000 Product...
    Date: May 18, 2023 Time: 9:00am (PDT), 12:00pm (EDT), 6:00pm (CEST)...
    Speaker: Sam Hester
    Sponsored By: Illumina
    6
    APR 06, 2023 | 10:00 AM
    Don't fear the robot: Lab automation for high-throughput discovery science
    Don't fear the robot: Lab automation for high-throughput discovery...
    Date: April 06, 2023 Time: 10:00am (PDT), 1:00pm (EDT), 7:00pm (CEST) Join this webinar to learn how Carlos Goller has designed undergraduate and graduate courses to teach high-throughput di...
    Speaker: Carlos Goller
    Sponsored By: Opentrons
    17
     
     
  • MAR 08, 2023 | 9:00 AM
    Boost microbial detection sensitivity with unbiased human host DNA and RNA depletion
    Boost microbial detection sensitivity with unbiased human host...
    Date: March 08, 2023 Time: 9:00am (PST), 12:00pm (EST), 6:00pm (CET) An unbiased characterization of the human microbiome is crucial to a more complete understanding of microbial effect on h...
    Speaker: Zenas George, Ph.D.
    Sponsored By: Jumpcode Genomics
    8
    NOV 15, 2022 | 8:00 AM
    Beyond SARS-CoV-2, application of Absolute Q digital PCR system for waterborne pathogens
    Beyond SARS-CoV-2, application of Absolute Q digital PCR system...
    Date: November 15, 2022 Time: 8:00am (PST), 11:00am (EST), 5:00pm (CET) Waterborne pathogens lead to deteriorating water quality and challenge global health and economy. The latest U.S. Envi...
    Speaker: Huiyun Wu
    Sponsored By: Thermo Fisher Scientific
    16
    SEP 07, 2022 | 12:00 PM
    A Universal "Day Zero" Infectious Disease Testing Strategy Exploiting CRISPR-based Sample Depletion and Metagenomic Sequencing with Live Q&A
    A Universal "Day Zero" Infectious Disease Testing Strategy Exploiting...
    The lack of preparedness for detecting the highly infectious SARS-CoV-2 pathogen, the pathogen responsible for the COVID-19 disease, has caused enormous harm to public health and the economy...
    Speaker: Jon Armstrong, MSc
    Presented at: Microbiology Week Virtual Event Series 2022
    Sponsored By: Jumpcode Genomics
    5
    APR 19, 2022 | 5:30 AM
    C.E. CREDITS
    Rescuing Low Frequency Variants Within Intra-Host Viral Populations Directly from Oxford Nanopore Sequencing Data
    Rescuing Low Frequency Variants Within Intra-Host Viral Populations...
    Infectious disease monitoring on Oxford Nanopore Technologies (ONT) platforms offers rapid turnaround times and low cost. Tracking low frequency intra-host variants provides important insigh...
    Speaker: Yunxi Liu
    Presented at: Genetics Week Virtual Event Series 2022
    2
    OCT 27, 2021 | 10:00 AM
    A CRISPR powered NGS library prep to improve viral, bacterial and host transcript detection in shotgun metagenomic sequencing
    A CRISPR powered NGS library prep to improve viral, bacterial...
    Date: October 27, 2021 Time: 10:00am (PDT), 1:00pm (EDT) The COVID-19 pandemic has brought global awareness to the dangers of emerging pathogens to human health and welfare. Common molecular...
    Speaker: Jon Armstrong, MSc
    Sponsored By: Jumpcode Genomics
    6 2
     
     
  • OCT 13, 2021 | 4:30 PM
    Delivering Insights by Analyzing Metagenomic NGS Data
    Delivering Insights by Analyzing Metagenomic NGS Data
    In this session we will use a set of reads enriched for viral sequences and sequences from wastewater treatment plants. Specifically the aim is to assemble whole SARS-CoV-2 genomes from such...
    Speaker: Patrick Ettenhuber, PhD
    Presented at: Coronavirus Series
    Sponsored By: QIAGEN
    1
    SEP 08, 2021 | 12:00 AM
    Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty to Pharmaceutical and Clinical Application(s)
    Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty...
    The Human Microbiome Project was conceived almost 15 years ago, as an extension of the Human Genome Project, to explore the diversity of human-associated microorganisms at multiple body site...
    Speaker: Ramy K. Aziz, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    1
    MAY 27, 2021 | 11:00 AM
    Planning to Succeed - How and where standardization can improve your microbiome studies
    Planning to Succeed - How and where standardization can improve...
    Date: May 27, 2021 Time: 11:00am PDT, 2:00pm EDT Microbiome studies often suffer from issues that recent technological advances can solve easily. In this seminar, we will walk through planni...
    Speaker: Dr. Julia Cope, PhD.
    Sponsored By: Mawi DNA Technologies
    7 3
    APR 21, 2021 | 7:30 AM
    Panel Presentation: Next-Generation Sequencing in the Global Response to the COVID-19 Pandemic
    Panel Presentation: Next-Generation Sequencing in the Global Response...
    The SARS-CoV-2 pandemic is challenging our health care systems and has profoundly impacted our society. Due to the poor global public health response, SARS-CoV-2 has developed many variants....
    Speaker: Eric Allen, MBA, M. Eng. Bioengineering , Michael Oberholzer, PhD
    Presented at: Genetics Week Virtual Event Series 2021
    2
    APR 20, 2021 | 4:30 PM
    C.E. CREDITS
    High-throughput clinical and environmental viral extraction and sequencing
    High-throughput clinical and environmental viral extraction and...
    COVID-19 is a severe disease that has caused >1 million deaths in under one year. As this disease is novel, the molecular and cellular underpinnings of the progressive tissue injury are p...
    Speaker: Christopher Mason, Ph.D
    Presented at: Genetics Week Virtual Event Series 2021
    Sponsored By: Tecan
    2
     
     
  • APR 20, 2021 | 12:00 AM
    C.E. CREDITS
    Low error rate long-reads enable the identification of long variant haplotypes in metagenome assemblies
    Low error rate long-reads enable the identification of long variant...
    Microbial communities include distinct lineages of closely related organisms which have proved challenging to separate in metagenomic assembly. Challenges include the existence of highly rel...
    Speaker: Derek Bickhart, PhD
    Presented at: Genetics Week Virtual Event Series 2021
    2
    SEP 17, 2020 | 11:00 AM
    Host and Viral Transcriptomes During COVID-19 Infection
    Host and Viral Transcriptomes During COVID-19 Infection
    In less than nine months, the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has killed hundreds of thousands of people, including >23,000 in New York City (NYC) alone. The...
    Speaker: Christopher E. Mason, PhD
    Presented at: Coronavirus Series
    3
    SEP 17, 2020 | 12:00 AM
    The detection, characterization, and surveillance of the SARS-CoV-2 viral genome using hybridization capture-based NGS assay
    The detection, characterization, and surveillance of the SARS-CoV-2...
    As the spread of infectious diseases, current pandemic, and growing antimicrobial resistance (AMR) continues globally, next-generation sequencing (NGS) became a tool to diagnose infectious d...
    Speaker: Dorottya Nagy-Szakal, MD PhD
    Presented at: Coronavirus Series
    1
    SEP 10, 2020 | 10:00 AM
    Keynote Presentation: Squeezing out understanding from sequences: Genome to Phenome Connections in Viruses of Microbes
    Keynote Presentation: Squeezing out understanding from sequences:...
    Enigmatic and often vilified, viruses are now known to play important and possibly indispensable roles in the biology and ecology of cellular organisms. Evidence of viral impacts are everywh...
    Speaker: K. Eric Wommack
    Presented at: Microbiology Week Virtual Event Series 2020
    1
    SEP 10, 2020 | 12:00 AM
    Identifying and linking antimicrobial resistance genes in metagenomes with new DNA sequencing technologies
    Identifying and linking antimicrobial resistance genes in metagenomes...
    The transfer of antimicrobial resistance genes (ARG) to pathogenic microbes is a major concern in modern medicine. Antibiotic therapies are often rendered ineffective by horizontal acquisiti...
    Speaker: Derek Bickhart, PhD
    Presented at: Microbiology Week Virtual Event Series 2020
    4
     
     
  • SEP 10, 2020 | 12:00 AM
    Precision infectious disease discovery using next-generation sequencing and AI to provide insights into respiratory, urine, and stool samples
    Precision infectious disease discovery using next-generation sequencing...
    Lessons around leveraging high-complexity next-generation sequencing tests for precision infectious disease discovery to guide patient treatment and improve health outcomes. Learning Objecti...
    Speaker: Niamh O'Hara, PhD
    Presented at: Microbiology Week Virtual Event Series 2020
    1
    JUL 02, 2020 | 2:00 PM
    Customized Theragen PMRA chip : design history and application examples
    Customized Theragen PMRA chip : design history and application...
    Theragen Bio. (TheragenEtex Subsidiary company) has been conducted the genome-wide research and the genome-based genetic testing services. From 2007, researchers of Theragen Bio. are collabo...
    Speaker: Kyung-Won Hong, PhD
    Presented at: APJ Virtual Genetic Solutions Tour 2020
    1
    JUL 01, 2020 | 12:15 PM
    Ion Torrent NGS-based simple and intuitive solutions for microbiome research
    Ion Torrent NGS-based simple and intuitive solutions for microbiome...
    Here I review the applications of Ion Torrent NGS technology in the field of microbiome research and some recent publications about it. With Ion Torrent 16S rRNA next generation sequencing,...
    Speaker: Keun-Joon Park, PhD
    Presented at: APJ Virtual Genetic Solutions Tour 2020
    2
    JUN 17, 2020 | 1:30 PM
    Insights into the Pathogenesis of COVID-19 as Revealed by Spatial Biology
    Insights into the Pathogenesis of COVID-19 as Revealed by Spatial...
    Understanding the complex interplay between a pathogen and the host response is important to developing effective vaccines and therapeutics. The nCounter® Analysis System and GeoMx®...
    Speaker: Joseph M. Beechem, PhD , Christopher E. Mason, PhD , Robert Schwartz, PhD
    Presented at: Coronavirus Series
    Sponsored By: NanoString Technologies
    9
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