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    Metagenomics

    Metagenomics is the holistic analysis of the genomes of organisms within an environmentally-obtained sample.

    Webinars

    • APR 22, 2020 | 12:00 AM
      Precision Infectious Disease Diagnostics Using Next-Generation Sequencing and AI
      Precision Infectious Disease Diagnostics Using Next-Generation...
      As the spread of infectious diseases, current pandemic, and growing antimicrobial resistance (AMR) continues globally, next-generation sequencing (NGS) and specifically metagenomics became a...
      Speaker: Dorottya Nagy-Szakal, MD PhD
      Presented at: Genetics Week Virtual Event Series 2020
      2
      OCT 15, 2019 | 10:00 AM
      The 'Three Peak Challenge' for long-read, ultra-deep stool metagenomics on the PromethION
      The 'Three Peak Challenge' for long-read, ultra-deep stool metagenomics...
      DATE: October 15, 2019TIME: 10:00am PDTAdvances in Next-Generation Sequencing technologies as well as bioinformatic tools have advanced our ability to research and explore both human...
      Speaker: Josh Quick , Janina A. Krumbeck, PhD.
      Sponsored By: Zymo Research
      12
      SEP 18, 2019 | 9:00 AM
      Virus Hunters
      Virus Hunters
      DATE: September 18, 2019 TIME: 9:00am PDT, 12:00pm EDTDue to globalization, changes in the environment and climate, and the encroach- ment of humans into natural habitats, recent out...
      Speaker: Michael Berg, PhD
      Sponsored By: Abbott Molecular Diagnostic
      10
      SEP 12, 2019 | 12:00 PM
      Multi-Omic Approaches for the Study of Vaginal Microbial Communities
      Multi-Omic Approaches for the Study of Vaginal Microbial Communities
      Vaginal microbial communities play an important role in women’s heath. It is now clear that the vaginal microbiome is linked to pregnancy complications such as preterm birth and risk f...
      Speaker: Jennifer Fettweis, PhD
      Presented at: Microbiology & Immunology Virtual Event Series 2019
      2
      SEP 12, 2019 | 10:30 AM
      Analysis of human gut microbiomes and antibiotic resistomes of pediatric patients undergoing stem cell transplantation
      Analysis of human gut microbiomes and antibiotic resistomes of...
      The emergence and spread of antimicrobial-resistant (AMR) bacteria and resistance mechanisms pose a serious challenge to laboratories in both hospital clinical microbiology and public health...
      Speaker: Jonathan Jacobs, PhD
      Presented at: Microbiology & Immunology Virtual Event Series 2019
      Sponsored By: QIAGEN
      5
      SEP 12, 2019 | 6:00 AM
      Using the NASA GeneLab Data System to Study the Metagenomes of Spaceships and Their Occupants
      Using the NASA GeneLab Data System to Study the Metagenomes of...
      With humans pushing to live further off Earth for longer periods of time, it is increasingly important to understand the changes that occur in biological systems during spaceflight whether th...
      Speaker: Jonathan Galazka, PhD , Daniela Bezdan, PhD , Peng Jiang, PhD
      Presented at: Microbiology & Immunology Virtual Event Series 2019
      1
      SEP 11, 2019 | 9:00 AM
      Using metagenomics and bioinformatics to investigate bacterial-fungal interactions
      Using metagenomics and bioinformatics to investigate bacterial-fungal...
      Learning objectives:1. Metagenomic analysis is already complex, and complicated further by incomplete and non-standardized databases of known organisms2. Fungi may have their own 'mic...
      Speaker: Patrick Chain, PhD
      Presented at: Microbiology & Immunology Virtual Event Series 2019
      Sponsored By: Illumina
      8 1
      SEP 11, 2019 | 9:00 AM
      Microbial Detection Total Solution Based on MGISEQ High-Throughput Sequencing Platform - Accelerating the Application of Metagenomics in the Screening and Prevention of Infectious Disease
      Microbial Detection Total Solution Based on MGISEQ High-Throughput...
      Traditional pathogen detection methods rely on the identification of pathogens known to be associated with a particular syndrome. In many cases, it involves complex methodology, lengthy proce...
      Speaker: Kin Kuok, PhD
      Presented at: Microbiology & Immunology Virtual Event Series 2019
      2
      AUG 14, 2019 | 8:00 AM
      The Metagenomics of Dozens of Earth's Cities and One Space Station
      The Metagenomics of Dozens of Earth's Cities and One Space Station
      DATE: August 14, 2019TIME: 8:00am PDT Infectious disease surveillance and monitoring is critical in settings where disease outbreaks and antibiotic resistance can dramatically im...
      Speaker: Dr. Christopher Mason
      Sponsored By: Zymo Research
      2
      JUN 20, 2019 | 10:30 AM
      The Massively Parallel Sequencing (MPS) Revolution
      The Massively Parallel Sequencing (MPS) Revolution
      The development of automated DNA sequencers utilizing Sanger sequencing and capillary electrophoresis made it possible to develop the first draft sequences of the human genome. The cost of do...
      Speaker: David Smith, PhD
      Presented at: Precision Medicine Virtual Event Series 2019
      1
      MAY 16, 2019 | 4:00 PM
      Towards Standardized Workflows - A focus on microbiome insights
      Towards Standardized Workflows - A focus on microbiome insights
      DATE: May 16, 2019TIME: 7:00am PDT, 10:00am EDT, 4:00pm CEST The emergence of NGS is revolutionizing the microbiological sciences and transforming medicine. Deep sequencing has...
      Speaker: Rita Colwell, PhD , Christiane Honisch, PhD
      Sponsored By: Eppendorf
      10 2
      MAY 09, 2019 | 12:00 PM
      A Metagenomic Assay to Interrogate the Role of Virome and Microbiome in Cancer
      A Metagenomic Assay to Interrogate the Role of Virome and Microbiome...
      Screening to identify all known viruses and other pathogenic microorganisms including bacteria, fungus and parasites in human tumor tissues will provide a more comprehensive understanding of...
      Speaker: Erle Robertson, PhD
      Presented at: Genetics and Genomics Virtual Event Series 2019
      Sponsored By: Agilent
      3
      SEP 13, 2018 | 9:00 AM
      Novel Solutions for Unbiased Results in Metagenomic Analysis of Human Microbiome Samples
      Novel Solutions for Unbiased Results in Metagenomic Analysis of...
      This two-part webinar will focus on novel techniques for obtaining unbiased results in 16S rRNA gene sequencing of challenging microbiome samples. Part 1 will feature QIAGEN’s solutions...
      Speaker: Matthew Fosbrink, PhD , Dominic O'Neil
      Presented at: Microbiology & Immunology Virtual Event Series 2018
      Sponsored By: QIAGEN
      1
      SEP 13, 2018 | 6:00 AM
      The Hurricane Microbiome Project: Environmental Exposures and Population Health
      The Hurricane Microbiome Project: Environmental Exposures and...
      The Alkek Center for Metagenomics and Microbiome Research (CMMR) at Baylor College of Medicine is pursuing numerous research and development efforts in the study of how the microbiome impacts...
      Speaker: Joseph Petrosino, PhD
      Presented at: Microbiology & Immunology Virtual Event Series 2018
      1
      SEP 13, 2018 | 6:00 AM
      The Evolution of Diverse, Ubiquitous CRESS DNA Viruses
      The Evolution of Diverse, Ubiquitous CRESS DNA Viruses
      In the US, the National Antimicrobial Resistance Monitoring System has been using WGS of Salmonella as a tool of routine surveillance since 2013. To date, NARMS has generated MIC and WGS data...
      Speaker: Siobain Duffy, PhD
      Presented at: Microbiology & Immunology Virtual Event Series 2018
      1
      SEP 12, 2018 | 12:00 PM
      ONETest PathoGenome: A Target Hybridization-Based Next-Generation Sequencing Assay to Tackle Undiagnosed Infections
      ONETest PathoGenome: A Target Hybridization-Based Next-Generation...
      Every year, approximately 800,000 critically ill patients are hospitals in the USA with undiagnosed infections. The only option is to treat these patients with broad-spectrum antimicrobial th...
      Speaker: Mohammad Qadir, PhD
      Presented at: Microbiology & Immunology Virtual Event Series 2018
      1 1
      SEP 12, 2018 | 10:30 AM
      Bacteria that Eat Electricity: Understanding Biocathodes Using Culture Independent Techniques
      Bacteria that Eat Electricity: Understanding Biocathodes Using...
      Some bacteria can use an electrode as an electron donor for respiration, generating an electrical current in the process. We are trying to understand a bacterial community that uses electrici...
      Speaker: Brian Eddie, PhD
      Presented at: Microbiology & Immunology Virtual Event Series 2018
      2 1
      SEP 12, 2018 | 6:00 AM
      Advancing Metagenomic Tools for Monitoring Antibiotic Resistance and Pathogen Gene Markers in Water and the Environment
      Advancing Metagenomic Tools for Monitoring Antibiotic Resistance...
      Next-generation DNA sequencing has opened new possibilities for microbial water quality monitoring, particularly for addressing emerging concerns like antibiotic resistance and opportunistic...
      Speaker: Amy Pruden, PhD
      Presented at: Microbiology & Immunology Virtual Event Series 2018
      3
      MAY 10, 2018 | 9:00 AM
      C.E. CREDITS
      Application of Long-Read PacBio Sequencing for High-Resolution Metagenomics
      Application of Long-Read PacBio Sequencing for High-Resolution...
      Short-read sequencing has found wide-spread use in metagenomics but the short read lengths and bias with regard to sequence composition have translated to limitations of the study of complex...
      Speaker: Jonas Korlach, PhD
      Presented at: Genetics and Genomics Virtual Event Series 2018
      1
      APR 12, 2018 | 12:00 PM
      Standards for Mixed Pathogen Detection via Metagenomics
      Standards for Mixed Pathogen Detection via Metagenomics
      I will update the current state of our candidate RM 8376 for mixed microbial DNA detection via NGS-based sequencing and metagenomics. After community engagement to understand the metrological...
      Speaker: Jason Kralj, PhD
      Presented at: Molecular Diagnostics Virtual Event Series 2018
      1
      APR 12, 2018 | 9:00 AM
      Metabolites, Germs and People: Eavesdropping on Human Microbial Communities
      Metabolites, Germs and People: Eavesdropping on Human Microbial...
      The Whiteson lab uses culture-independent metagenomics, metabolomics, and ecological statistics along with hypothesis driven, reductionist microbiology to answer questions about how bacteria...
      Speaker: Katrine Whiteson, PhD
      Presented at: Molecular Diagnostics Virtual Event Series 2018
      1
      JAN 30, 2018 | 9:00 AM
      WEBINAR: Metagenomics and base modifications from long, short, and linked-reads
      WEBINAR: Metagenomics and base modifications from long, short,...
      DATE: January 30, 2018TIME: 9:00AM PST, 12:00PM ESTInfectious disease surveillance and monitoring is critical in settings where disease outbreaks and antibiotic resistance can dramatica...
      Speaker: Christopher Mason, PhD , Shuiquan Tang, PhD
      Sponsored By: Zymo Research
      6 1
      SEP 14, 2017 | 12:00 PM
      How to deploy a portable lab for the surveillance of emerging infectious diseases
      How to deploy a portable lab for the surveillance of emerging...
      Genome sequencing can be used to discover new pathogens but it can also be used to monitor known ones. This is known as genomic surveillance and it becoming an increasingly important tool in...
      Speaker: Josh Quick
      Presented at: Microbiology & Immunology Virtual Event Series 2017
      Sponsored By: Oxford Nanopore Technologies
      1
      SEP 14, 2017 | 10:30 AM
      Clinical and Laboratory Studies of Zika Virus Infection
      Clinical and Laboratory Studies of Zika Virus Infection
      An unbiased metagenomic next-generation approach (mNGS) been shown to be useful in the broad identification of pathogens in clinical samples for infectious disease diagnosis, including viruse...
      Speaker: Charles Chiu, MD, PhD
      Presented at: Microbiology & Immunology Virtual Event Series 2017
      2
    APR 22, 2020 | 12:00 AM
    Precision Infectious Disease Diagnostics Using Next-Generation Sequencing and AI
    Precision Infectious Disease Diagnostics Using Next-Generation...
    As the spread of infectious diseases, current pandemic, and growing antimicrobial resistance (AMR) continues globally, next-generation sequencing (NGS) and specifically metagenomics became a...
    Speaker: Dorottya Nagy-Szakal, MD PhD
    Presented at: Genetics Week Virtual Event Series 2020
    2
    OCT 15, 2019 | 10:00 AM
    The 'Three Peak Challenge' for long-read, ultra-deep stool metagenomics on the PromethION
    The 'Three Peak Challenge' for long-read, ultra-deep stool metagenomics...
    DATE: October 15, 2019TIME: 10:00am PDTAdvances in Next-Generation Sequencing technologies as well as bioinformatic tools have advanced our ability to research and explore both human...
    Speaker: Josh Quick , Janina A. Krumbeck, PhD.
    Sponsored By: Zymo Research
    12
    SEP 18, 2019 | 9:00 AM
    Virus Hunters
    Virus Hunters
    DATE: September 18, 2019 TIME: 9:00am PDT, 12:00pm EDTDue to globalization, changes in the environment and climate, and the encroach- ment of humans into natural habitats, recent out...
    Speaker: Michael Berg, PhD
    Sponsored By: Abbott Molecular Diagnostic
    10
    SEP 12, 2019 | 12:00 PM
    Multi-Omic Approaches for the Study of Vaginal Microbial Communities
    Multi-Omic Approaches for the Study of Vaginal Microbial Communities
    Vaginal microbial communities play an important role in women’s heath. It is now clear that the vaginal microbiome is linked to pregnancy complications such as preterm birth and risk f...
    Speaker: Jennifer Fettweis, PhD
    Presented at: Microbiology & Immunology Virtual Event Series 2019
    2
    SEP 12, 2019 | 10:30 AM
    Analysis of human gut microbiomes and antibiotic resistomes of pediatric patients undergoing stem cell transplantation
    Analysis of human gut microbiomes and antibiotic resistomes of...
    The emergence and spread of antimicrobial-resistant (AMR) bacteria and resistance mechanisms pose a serious challenge to laboratories in both hospital clinical microbiology and public health...
    Speaker: Jonathan Jacobs, PhD
    Presented at: Microbiology & Immunology Virtual Event Series 2019
    Sponsored By: QIAGEN
    5
     
     
  • SEP 12, 2019 | 6:00 AM
    Using the NASA GeneLab Data System to Study the Metagenomes of Spaceships and Their Occupants
    Using the NASA GeneLab Data System to Study the Metagenomes of...
    With humans pushing to live further off Earth for longer periods of time, it is increasingly important to understand the changes that occur in biological systems during spaceflight whether th...
    Speaker: Jonathan Galazka, PhD , Daniela Bezdan, PhD , Peng Jiang, PhD
    Presented at: Microbiology & Immunology Virtual Event Series 2019
    1
    SEP 11, 2019 | 9:00 AM
    Using metagenomics and bioinformatics to investigate bacterial-fungal interactions
    Using metagenomics and bioinformatics to investigate bacterial-fungal...
    Learning objectives:1. Metagenomic analysis is already complex, and complicated further by incomplete and non-standardized databases of known organisms2. Fungi may have their own 'mic...
    Speaker: Patrick Chain, PhD
    Presented at: Microbiology & Immunology Virtual Event Series 2019
    Sponsored By: Illumina
    8 1
    SEP 11, 2019 | 9:00 AM
    Microbial Detection Total Solution Based on MGISEQ High-Throughput Sequencing Platform - Accelerating the Application of Metagenomics in the Screening and Prevention of Infectious Disease
    Microbial Detection Total Solution Based on MGISEQ High-Throughput...
    Traditional pathogen detection methods rely on the identification of pathogens known to be associated with a particular syndrome. In many cases, it involves complex methodology, lengthy proce...
    Speaker: Kin Kuok, PhD
    Presented at: Microbiology & Immunology Virtual Event Series 2019
    2
    AUG 14, 2019 | 8:00 AM
    The Metagenomics of Dozens of Earth's Cities and One Space Station
    The Metagenomics of Dozens of Earth's Cities and One Space Station
    DATE: August 14, 2019TIME: 8:00am PDT Infectious disease surveillance and monitoring is critical in settings where disease outbreaks and antibiotic resistance can dramatically im...
    Speaker: Dr. Christopher Mason
    Sponsored By: Zymo Research
    2
    JUN 20, 2019 | 10:30 AM
    The Massively Parallel Sequencing (MPS) Revolution
    The Massively Parallel Sequencing (MPS) Revolution
    The development of automated DNA sequencers utilizing Sanger sequencing and capillary electrophoresis made it possible to develop the first draft sequences of the human genome. The cost of do...
    Speaker: David Smith, PhD
    Presented at: Precision Medicine Virtual Event Series 2019
    1
     
     
  • MAY 16, 2019 | 4:00 PM
    Towards Standardized Workflows - A focus on microbiome insights
    Towards Standardized Workflows - A focus on microbiome insights
    DATE: May 16, 2019TIME: 7:00am PDT, 10:00am EDT, 4:00pm CEST The emergence of NGS is revolutionizing the microbiological sciences and transforming medicine. Deep sequencing has...
    Speaker: Rita Colwell, PhD , Christiane Honisch, PhD
    Sponsored By: Eppendorf
    10 2
    MAY 09, 2019 | 12:00 PM
    A Metagenomic Assay to Interrogate the Role of Virome and Microbiome in Cancer
    A Metagenomic Assay to Interrogate the Role of Virome and Microbiome...
    Screening to identify all known viruses and other pathogenic microorganisms including bacteria, fungus and parasites in human tumor tissues will provide a more comprehensive understanding of...
    Speaker: Erle Robertson, PhD
    Presented at: Genetics and Genomics Virtual Event Series 2019
    Sponsored By: Agilent
    3
    SEP 13, 2018 | 9:00 AM
    Novel Solutions for Unbiased Results in Metagenomic Analysis of Human Microbiome Samples
    Novel Solutions for Unbiased Results in Metagenomic Analysis of...
    This two-part webinar will focus on novel techniques for obtaining unbiased results in 16S rRNA gene sequencing of challenging microbiome samples. Part 1 will feature QIAGEN’s solutions...
    Speaker: Matthew Fosbrink, PhD , Dominic O'Neil
    Presented at: Microbiology & Immunology Virtual Event Series 2018
    Sponsored By: QIAGEN
    1
    SEP 13, 2018 | 6:00 AM
    The Hurricane Microbiome Project: Environmental Exposures and Population Health
    The Hurricane Microbiome Project: Environmental Exposures and...
    The Alkek Center for Metagenomics and Microbiome Research (CMMR) at Baylor College of Medicine is pursuing numerous research and development efforts in the study of how the microbiome impacts...
    Speaker: Joseph Petrosino, PhD
    Presented at: Microbiology & Immunology Virtual Event Series 2018
    1
    SEP 13, 2018 | 6:00 AM
    The Evolution of Diverse, Ubiquitous CRESS DNA Viruses
    The Evolution of Diverse, Ubiquitous CRESS DNA Viruses
    In the US, the National Antimicrobial Resistance Monitoring System has been using WGS of Salmonella as a tool of routine surveillance since 2013. To date, NARMS has generated MIC and WGS data...
    Speaker: Siobain Duffy, PhD
    Presented at: Microbiology & Immunology Virtual Event Series 2018
    1
     
     
  • SEP 12, 2018 | 12:00 PM
    ONETest PathoGenome: A Target Hybridization-Based Next-Generation Sequencing Assay to Tackle Undiagnosed Infections
    ONETest PathoGenome: A Target Hybridization-Based Next-Generation...
    Every year, approximately 800,000 critically ill patients are hospitals in the USA with undiagnosed infections. The only option is to treat these patients with broad-spectrum antimicrobial th...
    Speaker: Mohammad Qadir, PhD
    Presented at: Microbiology & Immunology Virtual Event Series 2018
    1 1
    SEP 12, 2018 | 10:30 AM
    Bacteria that Eat Electricity: Understanding Biocathodes Using Culture Independent Techniques
    Bacteria that Eat Electricity: Understanding Biocathodes Using...
    Some bacteria can use an electrode as an electron donor for respiration, generating an electrical current in the process. We are trying to understand a bacterial community that uses electrici...
    Speaker: Brian Eddie, PhD
    Presented at: Microbiology & Immunology Virtual Event Series 2018
    2 1
    SEP 12, 2018 | 6:00 AM
    Advancing Metagenomic Tools for Monitoring Antibiotic Resistance and Pathogen Gene Markers in Water and the Environment
    Advancing Metagenomic Tools for Monitoring Antibiotic Resistance...
    Next-generation DNA sequencing has opened new possibilities for microbial water quality monitoring, particularly for addressing emerging concerns like antibiotic resistance and opportunistic...
    Speaker: Amy Pruden, PhD
    Presented at: Microbiology & Immunology Virtual Event Series 2018
    3
    MAY 10, 2018 | 9:00 AM
    C.E. CREDITS
    Application of Long-Read PacBio Sequencing for High-Resolution Metagenomics
    Application of Long-Read PacBio Sequencing for High-Resolution...
    Short-read sequencing has found wide-spread use in metagenomics but the short read lengths and bias with regard to sequence composition have translated to limitations of the study of complex...
    Speaker: Jonas Korlach, PhD
    Presented at: Genetics and Genomics Virtual Event Series 2018
    1
    APR 12, 2018 | 12:00 PM
    Standards for Mixed Pathogen Detection via Metagenomics
    Standards for Mixed Pathogen Detection via Metagenomics
    I will update the current state of our candidate RM 8376 for mixed microbial DNA detection via NGS-based sequencing and metagenomics. After community engagement to understand the metrological...
    Speaker: Jason Kralj, PhD
    Presented at: Molecular Diagnostics Virtual Event Series 2018
    1
     
     
  • APR 12, 2018 | 9:00 AM
    Metabolites, Germs and People: Eavesdropping on Human Microbial Communities
    Metabolites, Germs and People: Eavesdropping on Human Microbial...
    The Whiteson lab uses culture-independent metagenomics, metabolomics, and ecological statistics along with hypothesis driven, reductionist microbiology to answer questions about how bacteria...
    Speaker: Katrine Whiteson, PhD
    Presented at: Molecular Diagnostics Virtual Event Series 2018
    1
    JAN 30, 2018 | 9:00 AM
    WEBINAR: Metagenomics and base modifications from long, short, and linked-reads
    WEBINAR: Metagenomics and base modifications from long, short,...
    DATE: January 30, 2018TIME: 9:00AM PST, 12:00PM ESTInfectious disease surveillance and monitoring is critical in settings where disease outbreaks and antibiotic resistance can dramatica...
    Speaker: Christopher Mason, PhD , Shuiquan Tang, PhD
    Sponsored By: Zymo Research
    6 1
    SEP 14, 2017 | 12:00 PM
    How to deploy a portable lab for the surveillance of emerging infectious diseases
    How to deploy a portable lab for the surveillance of emerging...
    Genome sequencing can be used to discover new pathogens but it can also be used to monitor known ones. This is known as genomic surveillance and it becoming an increasingly important tool in...
    Speaker: Josh Quick
    Presented at: Microbiology & Immunology Virtual Event Series 2017
    Sponsored By: Oxford Nanopore Technologies
    1
    SEP 14, 2017 | 10:30 AM
    Clinical and Laboratory Studies of Zika Virus Infection
    Clinical and Laboratory Studies of Zika Virus Infection
    An unbiased metagenomic next-generation approach (mNGS) been shown to be useful in the broad identification of pathogens in clinical samples for infectious disease diagnosis, including viruse...
    Speaker: Charles Chiu, MD, PhD
    Presented at: Microbiology & Immunology Virtual Event Series 2017
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