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    Machine Learning

    Machine Learning: study of algorithms and statistical data. Used by computer systems to progressively improve their performance on a specific task.

    Webinars

    • SEP 23, 2020 | 12:00 AM
      Deep learning to integrate histology with spatial transcriptomics
      Deep learning to integrate histology with spatial transcriptomics
      I will present our new computer vision algorithm, ST-Net, which can computationally synthesize spatially resolved transcriptomics directly from H&E histology images (He et al. Nature Bio...
      Speaker: James Zou
      Presented at: Cell Biology Virtual Event Series 2020
      1
      SEP 10, 2020 | 12:00 AM
      Long read sequencing of the 16S-23S rRNA operon to characterize gut microbial changes associated with multiple sclerosis
      Long read sequencing of the 16S-23S rRNA operon to characterize...
      The microbiome has emerged as a major contributor to human health and disease. Numerous sources implicate shifts in the gut microbiome as potentially pathologic for a variety of autoimmune d...
      Speaker: Erin Longbrake, MD, PhD
      Presented at: Microbiology Week Virtual Event Series 2020
      1
      SEP 08, 2020 | 11:00 PM
      Applications of Machine Learning to Predict Clinical Provenance of Haemophilus influenzae
      Applications of Machine Learning to Predict Clinical Provenance...
      Background: Haemophilus influenzae is the causative agent of multiple human disease conditions among multiple sites in the human body. Underlying genetic mechanisms are elusive, particularly...
      Speaker: Joshua Earl, PhD
      Presented at: Microbiology Week Virtual Event Series 2020
      1
      AUG 06, 2020 | 12:00 AM
      An optical brain-machine interface through the development of protein, microscope, and deep learning tools
      An optical brain-machine interface through the development of...
      Our work focuses on developing an optical brain-machine interface capable of interacting with neural activity in real-time. In this talk, I will describe our progress toward building the com...
      Speaker: Yiyang Gong, PhD
      Presented at: 2020 Beckman Symposium
      1
      JUL 09, 2020 | 11:00 AM
      Learning to aggress: from complex social behavior to whole brain light sheet microscopy
      Learning to aggress: from complex social behavior to whole brain...
      DATE: July 9, 2020 TIME: 11:00am PT Maladaptive aggression is an immutable force that contributes to the suffering and death of millions of people around the world annually, as well as prese...
      Speaker: Sam Golden, Ph.D
      Sponsored By: Miltenyi Biotec
      10
      JUN 01, 2020 | 11:30 AM
      Symposium 1 - How Can Dynamical Systems Neuroscience Reciprocally Advance Machine Learning?
      Symposium 1 - How Can Dynamical Systems Neuroscience Reciprocally...
      This symposium will feature presenters whose research, jointly considered, may propel machine learning (ML) beyond statistical pattern matching to dynamical multi-scale interpretations. Key...
      Speaker: Organizer(s): Grace M. Hwang
      Presented at: 2020 6th annual BRAIN Initiative Investigators Virtual Meeting
      3
      MAY 28, 2020 | 10:00 AM
      In situ immune profiling of heart transplant biopsies improves diagnostic accuracy and rejection risk stratification
      In situ immune profiling of heart transplant biopsies improves...
      DATE: May 28, 2020 TIME: 10:00am PT, 1:00pm ET Cardiac allograft rejection is a serious concern in transplant medicine, conferring an increased risk of acute graft failure and adverse patient...
      Speaker: Eliot Peyster, MD, MSc
      Sponsored By: Akoya Biosciences
      11
      MAY 14, 2020 | 5:40 PM
      First experience with the Ion Torrent Genexus Workflow
      First experience with the Ion Torrent Genexus Workflow
      Operational barriers like complicated workflows and long turnaround times have hindered broad adoption of next-generation sequencing (NGS) in clinical oncology research. The new Ion Torrent...
      Speaker: Dr. Kojo Elenitoba-Johnson
      Presented at: OncomineWorld 2022: A Virtual NGS Education Meeting
      6
      MAY 14, 2020 | 5:40 PM
      First experience with the Ion Torrent Genexus Workflow
      First experience with the Ion Torrent Genexus Workflow
      Learning Objectives: 1. Participants will become familiar with basic aspects of the user experience with the Genexus system 2. Participants will learn about preliminary studies using a targe...
      Speaker: Dr. Kojo Elenitoba-Johnson
      Presented at: OncomineWorld Autumn: A virtual NGS education meeting
      1
      MAY 14, 2020 | 10:00 AM
      Massively Parallel Genome Engineering followed by pooled growth selections for rapid target discovery in microbes
      Massively Parallel Genome Engineering followed by pooled growth...
      DATE: May 14, 2020 TIME: 10:00am PT, 1:00pm ET Massively parallel genome engineering enables rapid and simultaneous evaluation of genotype-phenotype relationships at a genomic scale....
      Speaker: Stephen Federowicz, Ph.D.
      Sponsored By: Inscripta
      7
      MAY 06, 2020 | 12:00 AM
      Forensic Anthropology At La Línea: Advances In Computational Methods For The Identification Of The U.S.-México Border Dead.
      Forensic Anthropology At La Línea: Advances In Computational Methods...
      The ever-increasing number of deaths along the U.S.-México border and the diversification in the demographic characteristics of the Latin American migrants, who perish in this region,...
      Speaker: Bridget Algee-Hewitt, PhD
      Presented at: Forensic Sciences Virtual Event Series 2020
      2
      APR 22, 2020 | 12:00 AM
      The Cardean Transistor Infrastructure: using cloud-analysis software and "lab on a chip" technology to develop handheld readers for rapid virus detection
      The Cardean Transistor Infrastructure: using cloud-analysis software...
      Graphene-based Biology-gated Transistors (Cardean Transistors) directly read molecular signals of active biology using advanced electronics. This proprietary tech breakthrough can be used as...
      Speaker: Brett Goldsmith, PhD
      Presented at: Genetics Week Virtual Event Series 2020
      1
      APR 15, 2020 | 9:00 AM
      Single-cell multi-omics: DNA methylation and 3D genome
      Single-cell multi-omics: DNA methylation and 3D genome
      DATE: April 15, 2020 TIME: 9:00am PT, 12:00pm ET We report a molecular assay, Methyl-HiC, that can simultaneously capture the chromosome conformation and DNA methylome in a cell. Methyl-HiC...
      Speaker: Yaping Liu, Ph.D.
      Sponsored By: Zymo Research
      9 3
      APR 08, 2020 | 7:30 AM
      Keynote Presentation: New Paradigms in moving toward Point-of-Care Cell Therapy Services in the Hospital
      Keynote Presentation: New Paradigms in moving toward Point-of-Care...
      Genetically-modified cell therapies are revolutionizing medicine, offering new opportunities to treat cancer patients and potentially many other diseases. The process of producing gene-modif...
      Speaker: Robert Kruse, MD, PhD
      Presented at: BioProcessing Virtual Event Series 2020
      1
      MAR 11, 2020 | 3:00 PM
      PANEL: A Team Multi-Disciplinary Approach to Understanding the Neural Circuit Dynamics Underlying Working Memory and Decision-Making
      PANEL: A Team Multi-Disciplinary Approach to Understanding the...
      Working memory (the ability to hold some information in mind for a few seconds, and to manipulate that information) and decision-making (committing to one out of multiple possible choices) a...
      Speaker: Carlos Brody, PhD , Ben Engelhard, PhD , Stephen Keeley, PhD , Marlies Oostland, PhD , Lucas Pinto, MD, PhD , Adrian Wanner, PhD , Ilana Witten, PhD
      Presented at: Neuroscience Virtual Event Series 2020
      1
      MAR 11, 2020 | 1:30 PM
      PANEL: Dissecting the circuit logics in the amygdala underlying emotional learning
      PANEL: Dissecting the circuit logics in the amygdala underlying...
      Learning is often an emotional process. Emotional stimuli with different valences, such as threat and reward, can transform an otherwise neutral sensory input into one that can trigger disti...
      Speaker: Bo Li , Tianyi Mao , Haining Zhong
      Presented at: Neuroscience Virtual Event Series 2020
      1
      MAR 11, 2020 | 1:30 PM
      PANEL: The Neuronal Mechanisms of Human Episodic Memory: a Multidisciplinary Consortium Utilizing Human Single-Neuron Recordings
      PANEL: The Neuronal Mechanisms of Human Episodic Memory: a Multidisciplinary...
      Episodic memories are essential for human cognition, but the underlying neural mechanisms remain poorly understood. We utilize the opportunity to record in-vivo from human single neurons sim...
      Speaker: Adam Mamelak, MD , Ueli Rutishauser, PhD , Gabriel Kreiman, PhD , Jie Zheng, PhD
      Presented at: Neuroscience Virtual Event Series 2020
      1
      MAR 11, 2020 | 12:00 PM
      PANEL: Thought to action: developing brain machine interfaces to assist individuals with paralysis
      PANEL: Thought to action: developing brain machine interfaces...
      Brain machine interfaces (BMIs) aim to help patients with paralysis to use their recorded brain activity to control assistive devices. BMI research requires the collaboration of neuroscienti...
      Speaker: Tyson Aflalo, PhD , Richard Andersen, PhD , Spencer Kellis, PhD , Charles Liu, MD, PhD
      Presented at: Neuroscience Virtual Event Series 2020
      1
      MAR 11, 2020 | 9:00 AM
      PANEL: Neural circuit mechanisms of memory replay
      PANEL: Neural circuit mechanisms of memory replay
      Although neuroscience has provided a great deal of information about how neurons work, the fundamental question of how neurons function together in a network to produce cognition has been di...
      Speaker: György Buzsáki, PhD , Attila Losonczy , Mark Schnitzer , Ivan Soltesz
      Presented at: Neuroscience Virtual Event Series 2020
      1
      MAR 11, 2020 | 7:30 AM
      PANEL: Neuronal Circuit Resilience - How the Brain Manages to Maintain Reliable Behaviors with Unreliable Neurons
      PANEL: Neuronal Circuit Resilience - How the Brain Manages to...
      Brain function is remarkably reliable despite the imprecise performance of neurons, and the continuous perturbations caused by aging, disease or injury. How does the brain succeed in produci...
      Speaker: Adrienne Fairhall, PhD , Tim Gardner , Carlos Lois, MD, PhD
      Presented at: Neuroscience Virtual Event Series 2020
      1
      FEB 13, 2020 | 7:30 PM
      Introducing Flow Cytometry-assisted Antimicrobial Susceptibility Testing (FAST)
      Introducing Flow Cytometry-assisted Antimicrobial Susceptibility...
      DATE: February 14, 2020 TIME: 11:30am SGT, 2:30pm AET Antimicrobial resistance is a growing threat to the health and safety of the world’s population. The World Health Organisation rec...
      Speaker: Tim Inglis, PhD
      Sponsored By: Thermo Fisher Scientific
      4 1
      FEB 13, 2020 | 10:00 AM
      Introducing Flow Cytometry-assisted Antimicrobial Susceptibility Testing (FAST)
      Introducing Flow Cytometry-assisted Antimicrobial Susceptibility...
      DATE: February 13, 2020 TIME: 10:00am PST Antimicrobial resistance is a growing threat to the health and safety of the world’s population. The World Health Organisation recognizes fast...
      Speaker: Tim Inglis, PhD
      Sponsored By: Thermo Fisher Scientific
      12
      FEB 13, 2020 | 1:00 AM
      Introducing Flow Cytometry-assisted Antimicrobial Susceptibility Testing (FAST)
      Introducing Flow Cytometry-assisted Antimicrobial Susceptibility...
      DATE: February 13, 2020 TIME: 10:00am CET...
      Speaker: Tim Inglis, PhD
      Sponsored By: Thermo Fisher Scientific
      6
      JAN 01, 2020 | 6:00 AM
      Multi-region Neural Network Models of Adaptive and Maladaptive Learning in the Brain
      Multi-region Neural Network Models of Adaptive and Maladaptive...
      In Andalman et al, 2018, we explored the activity of over 10,000 neurons across more than 15 regions imaged simultaneously in larval zebrafish in a novel behavioral challenge paradigm. Compl...
      Speaker: Kanaka Rajan, PhD
      Presented at: Neuroscience Virtual Event Series 2020
      1
    SEP 23, 2020 | 12:00 AM
    Deep learning to integrate histology with spatial transcriptomics
    Deep learning to integrate histology with spatial transcriptomics
    I will present our new computer vision algorithm, ST-Net, which can computationally synthesize spatially resolved transcriptomics directly from H&E histology images (He et al. Nature Bio...
    Speaker: James Zou
    Presented at: Cell Biology Virtual Event Series 2020
    1
    SEP 10, 2020 | 12:00 AM
    Long read sequencing of the 16S-23S rRNA operon to characterize gut microbial changes associated with multiple sclerosis
    Long read sequencing of the 16S-23S rRNA operon to characterize...
    The microbiome has emerged as a major contributor to human health and disease. Numerous sources implicate shifts in the gut microbiome as potentially pathologic for a variety of autoimmune d...
    Speaker: Erin Longbrake, MD, PhD
    Presented at: Microbiology Week Virtual Event Series 2020
    1
    SEP 08, 2020 | 11:00 PM
    Applications of Machine Learning to Predict Clinical Provenance of Haemophilus influenzae
    Applications of Machine Learning to Predict Clinical Provenance...
    Background: Haemophilus influenzae is the causative agent of multiple human disease conditions among multiple sites in the human body. Underlying genetic mechanisms are elusive, particularly...
    Speaker: Joshua Earl, PhD
    Presented at: Microbiology Week Virtual Event Series 2020
    1
    AUG 06, 2020 | 12:00 AM
    An optical brain-machine interface through the development of protein, microscope, and deep learning tools
    An optical brain-machine interface through the development of...
    Our work focuses on developing an optical brain-machine interface capable of interacting with neural activity in real-time. In this talk, I will describe our progress toward building the com...
    Speaker: Yiyang Gong, PhD
    Presented at: 2020 Beckman Symposium
    1
    JUL 09, 2020 | 11:00 AM
    Learning to aggress: from complex social behavior to whole brain light sheet microscopy
    Learning to aggress: from complex social behavior to whole brain...
    DATE: July 9, 2020 TIME: 11:00am PT Maladaptive aggression is an immutable force that contributes to the suffering and death of millions of people around the world annually, as well as prese...
    Speaker: Sam Golden, Ph.D
    Sponsored By: Miltenyi Biotec
    10
     
     
  • JUN 01, 2020 | 11:30 AM
    Symposium 1 - How Can Dynamical Systems Neuroscience Reciprocally Advance Machine Learning?
    Symposium 1 - How Can Dynamical Systems Neuroscience Reciprocally...
    This symposium will feature presenters whose research, jointly considered, may propel machine learning (ML) beyond statistical pattern matching to dynamical multi-scale interpretations. Key...
    Speaker: Organizer(s): Grace M. Hwang
    Presented at: 2020 6th annual BRAIN Initiative Investigators Virtual Meeting
    3
    MAY 28, 2020 | 10:00 AM
    In situ immune profiling of heart transplant biopsies improves diagnostic accuracy and rejection risk stratification
    In situ immune profiling of heart transplant biopsies improves...
    DATE: May 28, 2020 TIME: 10:00am PT, 1:00pm ET Cardiac allograft rejection is a serious concern in transplant medicine, conferring an increased risk of acute graft failure and adverse patient...
    Speaker: Eliot Peyster, MD, MSc
    Sponsored By: Akoya Biosciences
    11
    MAY 14, 2020 | 5:40 PM
    First experience with the Ion Torrent Genexus Workflow
    First experience with the Ion Torrent Genexus Workflow
    Operational barriers like complicated workflows and long turnaround times have hindered broad adoption of next-generation sequencing (NGS) in clinical oncology research. The new Ion Torrent...
    Speaker: Dr. Kojo Elenitoba-Johnson
    Presented at: OncomineWorld 2022: A Virtual NGS Education Meeting
    6
    MAY 14, 2020 | 5:40 PM
    First experience with the Ion Torrent Genexus Workflow
    First experience with the Ion Torrent Genexus Workflow
    Learning Objectives: 1. Participants will become familiar with basic aspects of the user experience with the Genexus system 2. Participants will learn about preliminary studies using a targe...
    Speaker: Dr. Kojo Elenitoba-Johnson
    Presented at: OncomineWorld Autumn: A virtual NGS education meeting
    1
    MAY 14, 2020 | 10:00 AM
    Massively Parallel Genome Engineering followed by pooled growth selections for rapid target discovery in microbes
    Massively Parallel Genome Engineering followed by pooled growth...
    DATE: May 14, 2020 TIME: 10:00am PT, 1:00pm ET Massively parallel genome engineering enables rapid and simultaneous evaluation of genotype-phenotype relationships at a genomic scale....
    Speaker: Stephen Federowicz, Ph.D.
    Sponsored By: Inscripta
    7
     
     
  • MAY 06, 2020 | 12:00 AM
    Forensic Anthropology At La Línea: Advances In Computational Methods For The Identification Of The U.S.-México Border Dead.
    Forensic Anthropology At La Línea: Advances In Computational Methods...
    The ever-increasing number of deaths along the U.S.-México border and the diversification in the demographic characteristics of the Latin American migrants, who perish in this region,...
    Speaker: Bridget Algee-Hewitt, PhD
    Presented at: Forensic Sciences Virtual Event Series 2020
    2
    APR 22, 2020 | 12:00 AM
    The Cardean Transistor Infrastructure: using cloud-analysis software and "lab on a chip" technology to develop handheld readers for rapid virus detection
    The Cardean Transistor Infrastructure: using cloud-analysis software...
    Graphene-based Biology-gated Transistors (Cardean Transistors) directly read molecular signals of active biology using advanced electronics. This proprietary tech breakthrough can be used as...
    Speaker: Brett Goldsmith, PhD
    Presented at: Genetics Week Virtual Event Series 2020
    1
    APR 15, 2020 | 9:00 AM
    Single-cell multi-omics: DNA methylation and 3D genome
    Single-cell multi-omics: DNA methylation and 3D genome
    DATE: April 15, 2020 TIME: 9:00am PT, 12:00pm ET We report a molecular assay, Methyl-HiC, that can simultaneously capture the chromosome conformation and DNA methylome in a cell. Methyl-HiC...
    Speaker: Yaping Liu, Ph.D.
    Sponsored By: Zymo Research
    9 3
    APR 08, 2020 | 7:30 AM
    Keynote Presentation: New Paradigms in moving toward Point-of-Care Cell Therapy Services in the Hospital
    Keynote Presentation: New Paradigms in moving toward Point-of-Care...
    Genetically-modified cell therapies are revolutionizing medicine, offering new opportunities to treat cancer patients and potentially many other diseases. The process of producing gene-modif...
    Speaker: Robert Kruse, MD, PhD
    Presented at: BioProcessing Virtual Event Series 2020
    1
    MAR 11, 2020 | 3:00 PM
    PANEL: A Team Multi-Disciplinary Approach to Understanding the Neural Circuit Dynamics Underlying Working Memory and Decision-Making
    PANEL: A Team Multi-Disciplinary Approach to Understanding the...
    Working memory (the ability to hold some information in mind for a few seconds, and to manipulate that information) and decision-making (committing to one out of multiple possible choices) a...
    Speaker: Carlos Brody, PhD , Ben Engelhard, PhD , Stephen Keeley, PhD , Marlies Oostland, PhD , Lucas Pinto, MD, PhD , Adrian Wanner, PhD , Ilana Witten, PhD
    Presented at: Neuroscience Virtual Event Series 2020
    1
     
     
  • MAR 11, 2020 | 1:30 PM
    PANEL: Dissecting the circuit logics in the amygdala underlying emotional learning
    PANEL: Dissecting the circuit logics in the amygdala underlying...
    Learning is often an emotional process. Emotional stimuli with different valences, such as threat and reward, can transform an otherwise neutral sensory input into one that can trigger disti...
    Speaker: Bo Li , Tianyi Mao , Haining Zhong
    Presented at: Neuroscience Virtual Event Series 2020
    1
    MAR 11, 2020 | 1:30 PM
    PANEL: The Neuronal Mechanisms of Human Episodic Memory: a Multidisciplinary Consortium Utilizing Human Single-Neuron Recordings
    PANEL: The Neuronal Mechanisms of Human Episodic Memory: a Multidisciplinary...
    Episodic memories are essential for human cognition, but the underlying neural mechanisms remain poorly understood. We utilize the opportunity to record in-vivo from human single neurons sim...
    Speaker: Adam Mamelak, MD , Ueli Rutishauser, PhD , Gabriel Kreiman, PhD , Jie Zheng, PhD
    Presented at: Neuroscience Virtual Event Series 2020
    1
    MAR 11, 2020 | 12:00 PM
    PANEL: Thought to action: developing brain machine interfaces to assist individuals with paralysis
    PANEL: Thought to action: developing brain machine interfaces...
    Brain machine interfaces (BMIs) aim to help patients with paralysis to use their recorded brain activity to control assistive devices. BMI research requires the collaboration of neuroscienti...
    Speaker: Tyson Aflalo, PhD , Richard Andersen, PhD , Spencer Kellis, PhD , Charles Liu, MD, PhD
    Presented at: Neuroscience Virtual Event Series 2020
    1
    MAR 11, 2020 | 9:00 AM
    PANEL: Neural circuit mechanisms of memory replay
    PANEL: Neural circuit mechanisms of memory replay
    Although neuroscience has provided a great deal of information about how neurons work, the fundamental question of how neurons function together in a network to produce cognition has been di...
    Speaker: György Buzsáki, PhD , Attila Losonczy , Mark Schnitzer , Ivan Soltesz
    Presented at: Neuroscience Virtual Event Series 2020
    1
    MAR 11, 2020 | 7:30 AM
    PANEL: Neuronal Circuit Resilience - How the Brain Manages to Maintain Reliable Behaviors with Unreliable Neurons
    PANEL: Neuronal Circuit Resilience - How the Brain Manages to...
    Brain function is remarkably reliable despite the imprecise performance of neurons, and the continuous perturbations caused by aging, disease or injury. How does the brain succeed in produci...
    Speaker: Adrienne Fairhall, PhD , Tim Gardner , Carlos Lois, MD, PhD
    Presented at: Neuroscience Virtual Event Series 2020
    1
     
     
  • FEB 13, 2020 | 7:30 PM
    Introducing Flow Cytometry-assisted Antimicrobial Susceptibility Testing (FAST)
    Introducing Flow Cytometry-assisted Antimicrobial Susceptibility...
    DATE: February 14, 2020 TIME: 11:30am SGT, 2:30pm AET Antimicrobial resistance is a growing threat to the health and safety of the world’s population. The World Health Organisation rec...
    Speaker: Tim Inglis, PhD
    Sponsored By: Thermo Fisher Scientific
    4 1
    FEB 13, 2020 | 10:00 AM
    Introducing Flow Cytometry-assisted Antimicrobial Susceptibility Testing (FAST)
    Introducing Flow Cytometry-assisted Antimicrobial Susceptibility...
    DATE: February 13, 2020 TIME: 10:00am PST Antimicrobial resistance is a growing threat to the health and safety of the world’s population. The World Health Organisation recognizes fast...
    Speaker: Tim Inglis, PhD
    Sponsored By: Thermo Fisher Scientific
    12
    FEB 13, 2020 | 1:00 AM
    Introducing Flow Cytometry-assisted Antimicrobial Susceptibility Testing (FAST)
    Introducing Flow Cytometry-assisted Antimicrobial Susceptibility...
    DATE: February 13, 2020 TIME: 10:00am CET...
    Speaker: Tim Inglis, PhD
    Sponsored By: Thermo Fisher Scientific
    6
    JAN 01, 2020 | 6:00 AM
    Multi-region Neural Network Models of Adaptive and Maladaptive Learning in the Brain
    Multi-region Neural Network Models of Adaptive and Maladaptive...
    In Andalman et al, 2018, we explored the activity of over 10,000 neurons across more than 15 regions imaged simultaneously in larval zebrafish in a novel behavioral challenge paradigm. Compl...
    Speaker: Kanaka Rajan, PhD
    Presented at: Neuroscience Virtual Event Series 2020
    1
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