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    Sequencing

    Sequencing: is the process of determining the nucleic acid sequence - the order of nucleotides in DNA. It includes any method or technology that is used to determine the order of the four bases: adenine, guanine, cytosine, and thymine.

    Webinars

    • AUG 20, 2014 | 11:30 AM
      More Comprehensive Views of Human Genetic Variation
      More Comprehensive Views of Human Genetic Variation
      High-throughput short-read DNA sequencing has revolutionized our ability to measure genetic variation in the form of single-nucleotide polymorphisms (SNPs) in human genomes. However, ~75% of...
      Speaker: Jonas Korlach, PhD
      Presented at: Genetics and Genomics Virtual Event Series 2014
      8
      AUG 20, 2014 | 10:45 AM
      The Impact of the $1000 Genome on Medicine
      The Impact of the $1000 Genome on Medicine
      ...
      Speaker: Shawn Baker, PhD
      Presented at: Genetics and Genomics Virtual Event Series 2014
      8
      AUG 20, 2014 | 10:45 AM
      OncoScan Assay for copy number from FFPE. Publications & cases on actionable CNV detection
      OncoScan Assay for copy number from FFPE. Publications & cases...
      A recent publication in Nature Genetics1 analyzed TCGA data, and classified solid tumors into two mutually exclusive classes: C class tumors, driven by copy number alterations; and M class tu...
      Speaker: Padma Sundar, MBA, MPH
      Presented at: Genetics and Genomics Virtual Event Series 2014
      14
      AUG 20, 2014 | 10:30 AM
      One Platform. Many Analyses
      One Platform. Many Analyses
      Genome and exome sequencing are widely used for both basic and clinical research and diagnosis. Although sequencing costs have dropped dramatically and technology and algorithms used for call...
      Speaker: Sohela Shah, PhD
      Presented at: Genetics and Genomics Virtual Event Series 2014
      8
      AUG 20, 2014 | 8:45 AM
      Digitizing Life Using Synthetic Genomics
      Digitizing Life Using Synthetic Genomics
      In 2010, our team of synthetic biologists announced the creation of a bacterial cell that had a chemically synthesized genome. To build this synthetic Mycoplasma mycoides JCVI 1.0 we had to d...
      Speaker: John Glass, PhD
      Presented at: Genetics and Genomics Virtual Event Series 2014
      135
      AUG 20, 2014 | 8:45 AM
      Novel gene chip technologies and NGS sequencing for personalized medicine & diagnostic
      Novel gene chip technologies and NGS sequencing for personalized...
      The flexibility of the BioMark Real-Time PCR System, allow us to preform genetic research using different types of nano-fluidic (48.48 or 96.96) chips setup, in the thermal cycle of these chi...
      Speaker: Dani Bercovich, PhD
      Presented at: Genetics and Genomics Virtual Event Series 2014
      12
      AUG 20, 2014 | 8:30 AM
      Actionable mutation detection with multiplex pcr-based targeted enrichment approach for next generation sequencing (NGS)
      Actionable mutation detection with multiplex pcr-based targeted...
      Next-generation sequencing (NGS) has revolutionized extraction of genomic information, facilitating rapid advances in the fields of clinical research and molecular diagnostics. However, c...
      Speaker: Vikram Devgan, PhD, MBA
      Presented at: Genetics and Genomics Virtual Event Series 2014
      16
      AUG 20, 2014 | 8:00 AM
      Exploring Complex Structural Genomic Variation using Next-Gen Sequencing
      Exploring Complex Structural Genomic Variation using Next-Gen...
      Structural variants (SVs), defined as the deletion, duplication, insertion, inversion or translocation of genomic regions, are both a major source of genetic diversity in human populations an...
      Speaker: Ryan E. Mills, PhD
      Presented at: Genetics and Genomics Virtual Event Series 2014
      12
      AUG 20, 2014 | 8:00 AM
      High-resolution genomic analysis reveals genetic impacts of human papillomavirus in human cancers
      High-resolution genomic analysis reveals genetic impacts of human...
      One of the hallmarks of human cancers is genetic instability. My colleagues and I recently identified a remarkable association between human papillomavirus (HPV) and genomic structural variat...
      Speaker: David E Symer, MD, PhD
      Presented at: Genetics and Genomics Virtual Event Series 2014
      4
      AUG 20, 2014 | 7:30 AM
      Panel Discussion: Increasing productivity and reproducibility by automating DNA library preparation for Ion Torrent Sequencing
      Panel Discussion: Increasing productivity and reproducibility...
      Next Generation Sequencing has revolutionized genomic variant discovery. The major bottle-neck for sequencing projects is the individual, biological sample, library preparation. This platfo...
      Speaker: Joanna Hamilton, PhD, Lynne Apone, PhD, Zach Smith, MS
      Presented at: Genetics and Genomics Virtual Event Series 2014
      12
      JUN 26, 2014 | 10:00 AM
      Immunoassay Serology Treponemal Screen
      Immunoassay Serology Treponemal Screen
      Serology testing continues to be an indispensable tool for the management of several disease states, especially treponemal screening to monitor syphilis infection in the US. Come to this edu...
      Speaker: Tiffany MacKenzie, PhD
      Presented at: Discover More; Your Virtual Resource
      Diasorin
      53
      MAY 30, 2014 | 10:30 AM
      Are we able to amplify single bacterial/viral/fungal genome equivalent?
      Are we able to amplify single bacterial/viral/fungal genome equivalent?
      There is growing pressure to implement new generation sequencing platform in hospital emergency rooms. The utility would be obvious: identifying unknown pathogens form cerebrospinal fluid/pl...
      Speaker: Ivan Brukner, PhD
      Presented at: Clinical Diagnostics & Research Virtual Event Series 2014
      0
      MAY 30, 2014 | 7:30 AM
      Multiplexed Fusion Gene Detection using Next Generation Sequencing
      Multiplexed Fusion Gene Detection using Next Generation Sequencing
      As next-generation sequencing (NGS) platforms advance in their speed, ease-of-use, and cost-effectiveness, many translational researchers are transitioning from microarrays to RNA sequencing...
      Speaker: Kelli Bramlett and Jeoffrey Schageman
      Presented at: Clinical Diagnostics & Research Virtual Event Series 2014
      82
      MAY 29, 2014 | 12:00 PM
      Pharmacogenomics and Pharmacometabolomics for Personalized Medicine
      Pharmacogenomics and Pharmacometabolomics for Personalized Medicine
      Pharmcogenomics (PGx) is the 2nd potential clinical application of genomic medicine, preceded by genomic application for cancer. In the recently published, 2012 Institute of Medicine report o...
      Speaker: Steven Wong, PhD, DABCC(TC), FACB
      Presented at: Clinical Diagnostics & Research Virtual Event Series 2014
      36
      MAY 28, 2014 | 9:00 AM
      Keynote: Establishing an economic BRCA1 and BRCA2 (BRCA) gene analyses research workflow using custom AmpliSeq panel design and the Ion PGM System
      Keynote: Establishing an economic BRCA1 and BRCA2 (BRCA) gene...
      While the "Jolie effect" has refocused attention on the central role of BRCA gene analyses in the diagnosis and prevention of hereditary breast and ovarian cancer, there is a global disparity...
      Speaker: Jeffrey N Weitzel, MD
      Presented at: Clinical Diagnostics & Research Virtual Event Series 2014
      9
      APR 17, 2014 | 11:00 AM
      A Novel Method of Active Paraffin Removal
      A Novel Method of Active Paraffin Removal
        Formalin Fixation and Paraffin Embedding (FFPE) of tissue samples is a routine practice by pathologists; the technique enables high quality preservation of structural information. However, ...
      Speaker: Hamid Khoja, PhD,
      Sponsored By: Covaris, Covaris
      78
      MAR 20, 2014 | 1:00 PM
      The role of high throughput sequencing in the research and diagnosis of neurodegenerative disorders
      The role of high throughput sequencing in the research and diagnosis...
      Using high throughput next-generation sequencing to simultaneously search large number of genes for pathogenic mutations has numerous advantages. It decreases the pressure to narrow the dif...
      Speaker: Peter L Nagy, MD, PhD
      Presented at: Neuroscience Virtual Event Series 2014
      0
      MAR 20, 2014 | 11:00 AM
      Using brain imaging and biomarkers for diagnosis and investigation of Alzheimer's disease "The Alzheimer's Disease Neuroimaging Initiat
      Using brain imaging and biomarkers for diagnosis and investigation...
      Alzheimers disease (AD) is a neurodegenerative disorder producing cognitive impairment and dementia in millions of elders. Currently no treatment is effective to slow the progression of AD. M...
      Speaker: Michael Weiner, MD
      Presented at: Neuroscience Virtual Event Series 2014
      62
      MAR 20, 2014 | 7:00 AM
      Huntingtons Disease: Twenty years and counting
      Huntingtons Disease: Twenty years and counting
      Huntington's disease (HD) is a progressive, inherited, degenerative brain disorder that produces physical, mental and emotional changes. Named for George Huntington, the physician who fi...
      Speaker: Margaret Sutherland, PhD
      Presented at: Neuroscience Virtual Event Series 2014
      106
      MAR 19, 2014 | 10:00 AM
      MS Bioscreen: From the Bedside to the Bench and Back
      MS Bioscreen: From the Bedside to the Bench and Back
      We present a personalized medicine suite of software applications developed at UCSF for multiple sclerosis (MS): the MS Bioscreen. This new tool addresses the challenges of the dynamic manage...
      Speaker: Pierre-Antoine Gourraud, PhD, MPH
      Presented at: Neuroscience Virtual Event Series 2014
      25
      FEB 28, 2014 | 10:00 AM
      Whole exome sequencing in clinical research using the Ion Proton Sequencer for detection of relevant variants in rare disorders
      Whole exome sequencing in clinical research using the Ion Proton...
      ...
      Speaker: Christian Marshall, PhD
      Presented at: Advanced Genomics in Clinical and Translational Research - Rare Disease Day
      48
      FEB 19, 2014 | 10:00 AM
      Next-generation sequencing applications in advanced cancer samples: Experience with Ion AmpliSeq custom panels
      Next-generation sequencing applications in advanced cancer samples:...
      Making precision cancer care a future reality requires novel approachesto finding treatment targets in cancers. Single-gene assays currently performed in clinical research laboratories are in...
      Speaker: Christopher Corless, MD, PhD
      Presented at: Advanced Genomics in Clinical and Translational Research - Winter
      122
      FEB 19, 2014 | 9:00 AM
      Next-generation RNA-Seq and Exome-Seq using Ion Proton Sequencer for translational oncology research
      Next-generation RNA-Seq and Exome-Seq using Ion Proton Sequencer...
      Genome sequencing technologies have enabled a rapid expansion into understanding cancer biology, drug development, and treatment resistance. Research in our laboratory has focused on the app...
      Speaker: Milan Radovich, PhD
      Presented at: Advanced Genomics in Clinical and Translational Research - Winter
      106
      FEB 06, 2014 | 4:00 PM
      Biology and Management of Laboratory Rats and Mice
      Biology and Management of Laboratory Rats and Mice
      Laboratory rats and mice are the most used animal species in scientific research, but still having a lot of information available about them, there are many places in Latin America where ther...
      Speaker: Carolina Mourelle, LATG
      Presented at: Laboratory Animal Sciences Virtual Event Series 2014
      1
    AUG 20, 2014 | 11:30 AM
    More Comprehensive Views of Human Genetic Variation
    More Comprehensive Views of Human Genetic Variation
    High-throughput short-read DNA sequencing has revolutionized our ability to measure genetic variation in the form of single-nucleotide polymorphisms (SNPs) in human genomes. However, ~75% of...
    Speaker: Jonas Korlach, PhD
    Presented at: Genetics and Genomics Virtual Event Series 2014
    8
    AUG 20, 2014 | 10:45 AM
    The Impact of the $1000 Genome on Medicine
    The Impact of the $1000 Genome on Medicine
    ...
    Speaker: Shawn Baker, PhD
    Presented at: Genetics and Genomics Virtual Event Series 2014
    8
    AUG 20, 2014 | 10:45 AM
    OncoScan Assay for copy number from FFPE. Publications & cases on actionable CNV detection
    OncoScan Assay for copy number from FFPE. Publications & cases...
    A recent publication in Nature Genetics1 analyzed TCGA data, and classified solid tumors into two mutually exclusive classes: C class tumors, driven by copy number alterations; and M class tu...
    Speaker: Padma Sundar, MBA, MPH
    Presented at: Genetics and Genomics Virtual Event Series 2014
    14
    AUG 20, 2014 | 10:30 AM
    One Platform. Many Analyses
    One Platform. Many Analyses
    Genome and exome sequencing are widely used for both basic and clinical research and diagnosis. Although sequencing costs have dropped dramatically and technology and algorithms used for call...
    Speaker: Sohela Shah, PhD
    Presented at: Genetics and Genomics Virtual Event Series 2014
    8
    AUG 20, 2014 | 8:45 AM
    Digitizing Life Using Synthetic Genomics
    Digitizing Life Using Synthetic Genomics
    In 2010, our team of synthetic biologists announced the creation of a bacterial cell that had a chemically synthesized genome. To build this synthetic Mycoplasma mycoides JCVI 1.0 we had to d...
    Speaker: John Glass, PhD
    Presented at: Genetics and Genomics Virtual Event Series 2014
    135
     
     
  • AUG 20, 2014 | 8:45 AM
    Novel gene chip technologies and NGS sequencing for personalized medicine & diagnostic
    Novel gene chip technologies and NGS sequencing for personalized...
    The flexibility of the BioMark Real-Time PCR System, allow us to preform genetic research using different types of nano-fluidic (48.48 or 96.96) chips setup, in the thermal cycle of these chi...
    Speaker: Dani Bercovich, PhD
    Presented at: Genetics and Genomics Virtual Event Series 2014
    12
    AUG 20, 2014 | 8:30 AM
    Actionable mutation detection with multiplex pcr-based targeted enrichment approach for next generation sequencing (NGS)
    Actionable mutation detection with multiplex pcr-based targeted...
    Next-generation sequencing (NGS) has revolutionized extraction of genomic information, facilitating rapid advances in the fields of clinical research and molecular diagnostics. However, c...
    Speaker: Vikram Devgan, PhD, MBA
    Presented at: Genetics and Genomics Virtual Event Series 2014
    16
    AUG 20, 2014 | 8:00 AM
    Exploring Complex Structural Genomic Variation using Next-Gen Sequencing
    Exploring Complex Structural Genomic Variation using Next-Gen...
    Structural variants (SVs), defined as the deletion, duplication, insertion, inversion or translocation of genomic regions, are both a major source of genetic diversity in human populations an...
    Speaker: Ryan E. Mills, PhD
    Presented at: Genetics and Genomics Virtual Event Series 2014
    12
    AUG 20, 2014 | 8:00 AM
    High-resolution genomic analysis reveals genetic impacts of human papillomavirus in human cancers
    High-resolution genomic analysis reveals genetic impacts of human...
    One of the hallmarks of human cancers is genetic instability. My colleagues and I recently identified a remarkable association between human papillomavirus (HPV) and genomic structural variat...
    Speaker: David E Symer, MD, PhD
    Presented at: Genetics and Genomics Virtual Event Series 2014
    4
    AUG 20, 2014 | 7:30 AM
    Panel Discussion: Increasing productivity and reproducibility by automating DNA library preparation for Ion Torrent Sequencing
    Panel Discussion: Increasing productivity and reproducibility...
    Next Generation Sequencing has revolutionized genomic variant discovery. The major bottle-neck for sequencing projects is the individual, biological sample, library preparation. This platfo...
    Speaker: Joanna Hamilton, PhD, Lynne Apone, PhD, Zach Smith, MS
    Presented at: Genetics and Genomics Virtual Event Series 2014
    12
     
     
  • JUN 26, 2014 | 10:00 AM
    Immunoassay Serology Treponemal Screen
    Immunoassay Serology Treponemal Screen
    Serology testing continues to be an indispensable tool for the management of several disease states, especially treponemal screening to monitor syphilis infection in the US. Come to this edu...
    Speaker: Tiffany MacKenzie, PhD
    Presented at: Discover More; Your Virtual Resource
    Diasorin
    53
    MAY 30, 2014 | 10:30 AM
    Are we able to amplify single bacterial/viral/fungal genome equivalent?
    Are we able to amplify single bacterial/viral/fungal genome equivalent?
    There is growing pressure to implement new generation sequencing platform in hospital emergency rooms. The utility would be obvious: identifying unknown pathogens form cerebrospinal fluid/pl...
    Speaker: Ivan Brukner, PhD
    Presented at: Clinical Diagnostics & Research Virtual Event Series 2014
    0
    MAY 30, 2014 | 7:30 AM
    Multiplexed Fusion Gene Detection using Next Generation Sequencing
    Multiplexed Fusion Gene Detection using Next Generation Sequencing
    As next-generation sequencing (NGS) platforms advance in their speed, ease-of-use, and cost-effectiveness, many translational researchers are transitioning from microarrays to RNA sequencing...
    Speaker: Kelli Bramlett and Jeoffrey Schageman
    Presented at: Clinical Diagnostics & Research Virtual Event Series 2014
    82
    MAY 29, 2014 | 12:00 PM
    Pharmacogenomics and Pharmacometabolomics for Personalized Medicine
    Pharmacogenomics and Pharmacometabolomics for Personalized Medicine
    Pharmcogenomics (PGx) is the 2nd potential clinical application of genomic medicine, preceded by genomic application for cancer. In the recently published, 2012 Institute of Medicine report o...
    Speaker: Steven Wong, PhD, DABCC(TC), FACB
    Presented at: Clinical Diagnostics & Research Virtual Event Series 2014
    36
    MAY 28, 2014 | 9:00 AM
    Keynote: Establishing an economic BRCA1 and BRCA2 (BRCA) gene analyses research workflow using custom AmpliSeq panel design and the Ion PGM System
    Keynote: Establishing an economic BRCA1 and BRCA2 (BRCA) gene...
    While the "Jolie effect" has refocused attention on the central role of BRCA gene analyses in the diagnosis and prevention of hereditary breast and ovarian cancer, there is a global disparity...
    Speaker: Jeffrey N Weitzel, MD
    Presented at: Clinical Diagnostics & Research Virtual Event Series 2014
    9
     
     
  • APR 17, 2014 | 11:00 AM
    A Novel Method of Active Paraffin Removal
    A Novel Method of Active Paraffin Removal
      Formalin Fixation and Paraffin Embedding (FFPE) of tissue samples is a routine practice by pathologists; the technique enables high quality preservation of structural information. However, ...
    Speaker: Hamid Khoja, PhD,
    Sponsored By: Covaris, Covaris
    78
    MAR 20, 2014 | 1:00 PM
    The role of high throughput sequencing in the research and diagnosis of neurodegenerative disorders
    The role of high throughput sequencing in the research and diagnosis...
    Using high throughput next-generation sequencing to simultaneously search large number of genes for pathogenic mutations has numerous advantages. It decreases the pressure to narrow the dif...
    Speaker: Peter L Nagy, MD, PhD
    Presented at: Neuroscience Virtual Event Series 2014
    0
    MAR 20, 2014 | 11:00 AM
    Using brain imaging and biomarkers for diagnosis and investigation of Alzheimer's disease "The Alzheimer's Disease Neuroimaging Initiat
    Using brain imaging and biomarkers for diagnosis and investigation...
    Alzheimers disease (AD) is a neurodegenerative disorder producing cognitive impairment and dementia in millions of elders. Currently no treatment is effective to slow the progression of AD. M...
    Speaker: Michael Weiner, MD
    Presented at: Neuroscience Virtual Event Series 2014
    62
    MAR 20, 2014 | 7:00 AM
    Huntingtons Disease: Twenty years and counting
    Huntingtons Disease: Twenty years and counting
    Huntington's disease (HD) is a progressive, inherited, degenerative brain disorder that produces physical, mental and emotional changes. Named for George Huntington, the physician who fi...
    Speaker: Margaret Sutherland, PhD
    Presented at: Neuroscience Virtual Event Series 2014
    106
    MAR 19, 2014 | 10:00 AM
    MS Bioscreen: From the Bedside to the Bench and Back
    MS Bioscreen: From the Bedside to the Bench and Back
    We present a personalized medicine suite of software applications developed at UCSF for multiple sclerosis (MS): the MS Bioscreen. This new tool addresses the challenges of the dynamic manage...
    Speaker: Pierre-Antoine Gourraud, PhD, MPH
    Presented at: Neuroscience Virtual Event Series 2014
    25
     
     
  • FEB 28, 2014 | 10:00 AM
    Whole exome sequencing in clinical research using the Ion Proton Sequencer for detection of relevant variants in rare disorders
    Whole exome sequencing in clinical research using the Ion Proton...
    ...
    Speaker: Christian Marshall, PhD
    Presented at: Advanced Genomics in Clinical and Translational Research - Rare Disease Day
    48
    FEB 19, 2014 | 10:00 AM
    Next-generation sequencing applications in advanced cancer samples: Experience with Ion AmpliSeq custom panels
    Next-generation sequencing applications in advanced cancer samples:...
    Making precision cancer care a future reality requires novel approachesto finding treatment targets in cancers. Single-gene assays currently performed in clinical research laboratories are in...
    Speaker: Christopher Corless, MD, PhD
    Presented at: Advanced Genomics in Clinical and Translational Research - Winter
    122
    FEB 19, 2014 | 9:00 AM
    Next-generation RNA-Seq and Exome-Seq using Ion Proton Sequencer for translational oncology research
    Next-generation RNA-Seq and Exome-Seq using Ion Proton Sequencer...
    Genome sequencing technologies have enabled a rapid expansion into understanding cancer biology, drug development, and treatment resistance. Research in our laboratory has focused on the app...
    Speaker: Milan Radovich, PhD
    Presented at: Advanced Genomics in Clinical and Translational Research - Winter
    106
    FEB 06, 2014 | 4:00 PM
    Biology and Management of Laboratory Rats and Mice
    Biology and Management of Laboratory Rats and Mice
    Laboratory rats and mice are the most used animal species in scientific research, but still having a lot of information available about them, there are many places in Latin America where ther...
    Speaker: Carolina Mourelle, LATG
    Presented at: Laboratory Animal Sciences Virtual Event Series 2014
    1
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